Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VOI49_RS10150 Genome accession   NZ_CP142018
Coordinates   2021199..2022335 (-) Length   378 a.a.
NCBI ID   WP_226313885.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2016199..2027335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS10125 - 2017482..2019044 (-) 1563 WP_324739004.1 DUF2079 domain-containing protein -
  VOI49_RS10130 - 2019389..2019694 (-) 306 WP_003053101.1 DUF1292 domain-containing protein -
  VOI49_RS10135 ruvX 2019705..2020124 (-) 420 WP_003053103.1 Holliday junction resolvase RuvX -
  VOI49_RS10140 - 2020121..2020390 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  VOI49_RS10145 spx 2020502..2020900 (-) 399 WP_003053105.1 transcriptional regulator Spx -
  VOI49_RS10150 recA 2021199..2022335 (-) 1137 WP_226313885.1 recombinase RecA Machinery gene
  VOI49_RS10155 cinA 2022393..2023664 (-) 1272 WP_226313886.1 competence/damage-inducible protein A Machinery gene
  VOI49_RS10160 - 2023860..2024144 (-) 285 WP_226313887.1 VOC family protein -
  VOI49_RS10165 - 2024144..2024716 (-) 573 WP_115253192.1 DNA-3-methyladenine glycosylase I -
  VOI49_RS10170 ruvA 2024726..2025319 (-) 594 WP_226313888.1 Holliday junction branch migration protein RuvA -
  VOI49_RS10175 - 2025321..2026541 (-) 1221 WP_226313889.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40762.46 Da        Isoelectric Point: 4.8451

>NTDB_id=921042 VOI49_RS10150 WP_226313885.1 2021199..2022335(-) (recA) [Streptococcus dysgalactiae strain lu24]
MAKKLKKNEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
TTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKRYLADHPELFDEIDRKVRVKFGLLEESEEESAMVMVTEETDDLVLDLDNGIEIED

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=921042 VOI49_RS10150 WP_226313885.1 2021199..2022335(-) (recA) [Streptococcus dysgalactiae strain lu24]
TTGGCAAAAAAATTGAAAAAAAACGAAGAAATCACTAAAAAATTTGGTGACGAGCGTCGTAAGGCACTTGATGATGCCCT
AAAAAATATTGAAAAAGATTTTGGTAAGGGTGCAGTGATGCGCTTGGGAGAACGTGCAGAGCAAAAAGTTCAGGTTATGA
GTTCAGGAAGCCTAGCTCTTGATATTGCGCTTGGAGCGGGTGGTTATCCTAAAGGACGTATCATTGAGATCTATGGTCCA
GAATCTTCCGGTAAAACAACTGTGGCTTTACATGCTGTGGCACAAGCTCAAAAAGAAGGTGGAATCGCAGCCTTTATCGA
TGCCGAGCATGCGCTTGATCCAGCTTACGCTGCTGCGCTTGGGGTTAATATTGATGAACTCCTTTTGTCTCAACCAGATT
CTGGAGAACAAGGACTTGAAATTGCAGGTAAGTTGATTGATTCTGGTGCGGTTGACTTGGTTGTTGTCGATTCAGTAGCA
GCTTTAGTGCCACGTGCTGAAATTGATGGTGATATTGGCGATAGCCATGTCGGATTGCAAGCACGTATGATGAGTCAGGC
GATGCGCAAGCTATCGGCTTCTATTAACAAAACAAAAACTATCGCTATCTTTATTAACCAATTGCGTGAAAAAGTTGGTG
TGATGTTTGGAAATCCTGAAACAACACCGGGCGGTCGTGCCTTGAAATTCTATGCTTCTGTTCGTTTAGATGTGCGTGGA
ACCACTCAAATTAAAGGAACTGGTGACCAAAAAGACAGTAGTATTGGTAAAGAAACAAAAATCAAAGTTGTTAAAAACAA
GGTAGCTCCTCCGTTTAAAGTGGCAGAGGTTGAAATCATGTATGGAGAAGGCATTTCCCGTACTGGAGAGCTTGTGAAAA
TTGCTTCTGATTTGGACATTATCCAAAAAGCAGGTGCTTGGTTCTCTTATAATGGCGAGAAAATTGGTCAAGGGTCTGAA
AATGCTAAGCGTTATTTGGCGGATCATCCAGAATTATTTGACGAGATTGATCGTAAAGTACGTGTTAAATTTGGTTTGCT
TGAAGAAAGCGAAGAAGAATCTGCTATGGTAATGGTGACAGAAGAAACCGATGATCTTGTTTTAGATTTAGATAACGGGA
TTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

98.148

100

0.981
  recA Streptococcus mutans UA159

87.99

100

0.892
  recA Streptococcus mitis NCTC 12261

85.379

100

0.865
  recA Streptococcus pneumoniae Rx1

84.675

100

0.862
  recA Streptococcus pneumoniae D39

84.675

100

0.862
  recA Streptococcus pneumoniae R6

84.675

100

0.862
  recA Streptococcus pneumoniae TIGR4

84.675

100

0.862
  recA Streptococcus mitis SK321

85.302

100

0.86
  recA Lactococcus lactis subsp. cremoris KW2

78.754

93.386

0.735
  recA Latilactobacillus sakei subsp. sakei 23K

70.623

89.153

0.63
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

87.037

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.315

89.153

0.556
  recA Acinetobacter baylyi ADP1

59.829

92.857

0.556
  recA Acinetobacter baumannii D1279779

59.207

93.386

0.553
  recA Neisseria gonorrhoeae MS11

60.35

90.741

0.548
  recA Neisseria gonorrhoeae MS11

60.35

90.741

0.548
  recA Neisseria gonorrhoeae strain FA1090

60.35

90.741

0.548
  recA Glaesserella parasuis strain SC1401

60

89.947

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

85.45

0.537
  recA Vibrio cholerae strain A1552

61.231

85.979

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

85.979

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.215

87.566

0.519
  recA Helicobacter pylori 26695

58.084

88.36

0.513
  recA Helicobacter pylori strain NCTC11637

58.084

88.36

0.513
  recA Ralstonia pseudosolanacearum GMI1000

58.133

87.831

0.511
  recA Pseudomonas stutzeri DSM 10701

58.537

86.772

0.508