Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VML59_RS16935 Genome accession   NZ_CP142003
Coordinates   3279319..3280350 (-) Length   343 a.a.
NCBI ID   WP_001283850.1    Uniprot ID   A0A1Y5ZML1
Organism   Bacillus pacificus strain AT31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3274319..3285350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VML59_RS16915 - 3274921..3275844 (-) 924 WP_000688009.1 dipeptidase -
  VML59_RS16920 spoVS 3275903..3276163 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  VML59_RS16925 - 3276312..3277106 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  VML59_RS16930 rny 3277271..3278833 (-) 1563 WP_000099774.1 ribonuclease Y -
  VML59_RS16935 recA 3279319..3280350 (-) 1032 WP_001283850.1 recombinase RecA Machinery gene
  VML59_RS16940 cinA 3280495..3281733 (-) 1239 WP_074567377.1 competence/damage-inducible protein CinA Machinery gene
  VML59_RS16945 pgsA 3281754..3282332 (-) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  VML59_RS16950 - 3282396..3283307 (-) 912 WP_000137481.1 helix-turn-helix domain-containing protein -
  VML59_RS16955 - 3283329..3284114 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  VML59_RS16960 - 3284254..3284502 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  VML59_RS16965 ymfI 3284578..3285291 (-) 714 WP_000759612.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37327.37 Da        Isoelectric Point: 4.9093

>NTDB_id=920813 VML59_RS16935 WP_001283850.1 3279319..3280350(-) (recA) [Bacillus pacificus strain AT31]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERKVSTVSSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
IREHHGISEDSGAEDMEDPSLLD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=920813 VML59_RS16935 WP_001283850.1 3279319..3280350(-) (recA) [Bacillus pacificus strain AT31]
ATGAGTGATCGTCAAGCAGCGTTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCAGAGCGTAAAGTTTCTACGGTTTCTAGTGGTTCTTTAGCACTAGATGTGGCACTAGGAGTAGGCGGAT
ACCCACGTGGCCGTATTATCGAAATTTACGGACCTGAAAGTTCAGGTAAAACAACAGTTTCATTACATGCAATTGCAGAA
GTACAGCGCCAAGGTGGACAAGCGGCATTCATCGATGCTGAGCATGCAATGGATCCTGTATATGCACAAAAATTAGGTGT
TAACATCGATGAATTACTATTATCACAACCTGATACAGGGGAGCAAGGTTTAGAAATCGCAGAGGCACTTGTACGAAGTG
GTGCGGTTGATATTATCGTAATTGACTCTGTAGCAGCTCTTGTCCCAAAAGCTGAGATTGAAGGAGACATGGGTGACTCA
CACGTAGGTTTACAAGCTCGTCTAATGTCTCAAGCACTTCGTAAACTTTCAGGTGCAATCAATAAATCAAAAACAATCGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGAAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACTGTTCGTCTTGAAGTACGTCGTGCGGAGCAATTAAAACAAGGTAACGACATTGTTGGTAATAAAACA
AAAGTAAAAGTAGTTAAAAATAAAGTGGCACCACCATTCCGTGTTGCGGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTTCAAAAGAGTGGTGCTTGGTACTCTTATAATGAAG
AACGCTTAGGACAAGGTCGTGAAAATTCGAAGCAGTTCTTAAAAGAAAATACGGATTTAAGAGAAGAAATTGCCTTCTTT
ATTCGTGAGCATCACGGAATTAGCGAAGATTCAGGTGCTGAAGATATGGAAGATCCAAGTCTTCTTGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y5ZML1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.97

96.21

0.837
  recA Latilactobacillus sakei subsp. sakei 23K

76.758

95.335

0.732
  recA Streptococcus pyogenes NZ131

70.427

95.627

0.673
  recA Streptococcus pneumoniae Rx1

69.697

96.21

0.671
  recA Streptococcus pneumoniae D39

69.697

96.21

0.671
  recA Streptococcus mitis NCTC 12261

69.697

96.21

0.671
  recA Streptococcus mitis SK321

69.697

96.21

0.671
  recA Streptococcus pneumoniae R6

69.697

96.21

0.671
  recA Streptococcus pneumoniae TIGR4

69.697

96.21

0.671
  recA Streptococcus mutans UA159

68.249

98.251

0.671
  recA Lactococcus lactis subsp. cremoris KW2

67.964

97.376

0.662
  recA Ralstonia pseudosolanacearum GMI1000

68.153

91.545

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.205

98.251

0.621
  recA Acinetobacter baumannii D1279779

62.099

100

0.621
  recA Neisseria gonorrhoeae strain FA1090

65.337

95.044

0.621
  recA Neisseria gonorrhoeae MS11

65.337

95.044

0.621
  recA Neisseria gonorrhoeae MS11

65.337

95.044

0.621
  recA Acinetobacter baylyi ADP1

60.87

100

0.612
  recA Helicobacter pylori 26695

62.614

95.918

0.601
  recA Helicobacter pylori strain NCTC11637

62.614

95.918

0.601
  recA Glaesserella parasuis strain SC1401

63.95

93.003

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

95.335

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.551

93.586

0.595
  recA Vibrio cholerae strain A1552

63.551

93.586

0.595
  recA Pseudomonas stutzeri DSM 10701

61.875

93.294

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

92.128

0.566