Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   VML59_RS16940 Genome accession   NZ_CP142003
Coordinates   3280495..3281733 (-) Length   412 a.a.
NCBI ID   WP_074567377.1    Uniprot ID   A0A1Y5ZL82
Organism   Bacillus pacificus strain AT31     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3275495..3286733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VML59_RS16920 spoVS 3275903..3276163 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  VML59_RS16925 - 3276312..3277106 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  VML59_RS16930 rny 3277271..3278833 (-) 1563 WP_000099774.1 ribonuclease Y -
  VML59_RS16935 recA 3279319..3280350 (-) 1032 WP_001283850.1 recombinase RecA Machinery gene
  VML59_RS16940 cinA 3280495..3281733 (-) 1239 WP_074567377.1 competence/damage-inducible protein CinA Machinery gene
  VML59_RS16945 pgsA 3281754..3282332 (-) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  VML59_RS16950 - 3282396..3283307 (-) 912 WP_000137481.1 helix-turn-helix domain-containing protein -
  VML59_RS16955 - 3283329..3284114 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  VML59_RS16960 - 3284254..3284502 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  VML59_RS16965 ymfI 3284578..3285291 (-) 714 WP_000759612.1 elongation factor P 5-aminopentanone reductase -
  VML59_RS16970 yfmH 3285394..3286680 (-) 1287 WP_000411944.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45477.76 Da        Isoelectric Point: 5.1160

>NTDB_id=920814 VML59_RS16940 WP_074567377.1 3280495..3281733(-) (cinA) [Bacillus pacificus strain AT31]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDENALALISDYFKRTGREFTENNKKQALVLNGANVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VRYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=920814 VML59_RS16940 WP_074567377.1 3280495..3281733(-) (cinA) [Bacillus pacificus strain AT31]
ATGAATGCTGAAATTATTGCGGTTGGAACAGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCCGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAGCGTGCGGACATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGGGGAAGAGCTTGTATATGACGAAAATGCATTAGCATTAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTGAATGGGGCAAATGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAGATGAAGCCAATGTAT
GTAAGGTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATTGCCCCGCTTGCCAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAGTTTTTCTACGGGTATGACCAAGAGTTTCTGCATTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TATCTTCCGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTATTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACTGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGTGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y5ZL82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.255

100

0.481
  cinA Streptococcus pneumoniae Rx1

46.778

100

0.476
  cinA Streptococcus pneumoniae R6

46.778

100

0.476
  cinA Streptococcus pneumoniae D39

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.539

100

0.473
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

41.534

91.748

0.381