Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VO178_RS08535 Genome accession   NZ_CP141829
Coordinates   1789479..1790540 (+) Length   353 a.a.
NCBI ID   WP_036124113.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain TZA38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1784479..1795540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO178_RS08510 (VO178_08510) - 1785199..1785456 (+) 258 WP_008178933.1 DUF3243 domain-containing protein -
  VO178_RS08515 (VO178_08515) - 1785683..1786468 (+) 786 WP_008178931.1 DUF3388 domain-containing protein -
  VO178_RS08520 (VO178_08520) - 1786485..1787414 (+) 930 WP_175422988.1 helix-turn-helix domain-containing protein -
  VO178_RS08525 (VO178_08525) pgsA 1787462..1788040 (+) 579 WP_025113992.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  VO178_RS08530 (VO178_08530) cinA 1788058..1789317 (+) 1260 WP_036124110.1 competence/damage-inducible protein A Machinery gene
  VO178_RS08535 (VO178_08535) recA 1789479..1790540 (+) 1062 WP_036124113.1 recombinase RecA Machinery gene
  VO178_RS08540 (VO178_08540) rny 1791064..1792623 (+) 1560 WP_008178918.1 ribonuclease Y -
  VO178_RS08545 (VO178_08545) - 1792770..1793534 (+) 765 WP_324730443.1 tyrosine-protein phosphatase -
  VO178_RS08550 (VO178_08550) - 1793566..1794723 (+) 1158 WP_324730153.1 O-antigen ligase family protein -
  VO178_RS08555 (VO178_08555) - 1794793..1795509 (+) 717 WP_036147487.1 YveK family protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38080.18 Da        Isoelectric Point: 4.7354

>NTDB_id=920024 VO178_RS08535 WP_036124113.1 1789479..1790540(+) (recA) [Lysinibacillus fusiformis strain TZA38]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGSINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENTAVLEEISNK
IRSSYGIAANSYTIAAHEEDEMDEELMSLLDEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=920024 VO178_RS08535 WP_036124113.1 1789479..1790540(+) (recA) [Lysinibacillus fusiformis strain TZA38]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCTTTAAAACAAATTGAAAAGAATTTTGGTAAAGGTTCAATCATGAAACT
CGGTGAAAAAACCGACTTAGAAATTGCGACATCCTCAAGTGGATCATTAGCACTTGACGCGGCATTAGGCGTAGGTGGTT
ATCCGCGTGGACGTATTATTGAAGTATATGGTCCTGAATCATCAGGTAAAACAACAGTTGCTTTACATGCTATTGCTGAA
GTACAAGCAAAAGGTGGACAAGCAGCATTTATCGATGCAGAACATGCATTGGACCCAATCTATGCTCAAAAATTGGGTGT
CAACATTGATGAGTTATTATTATCACAGCCAGATACAGGGGAACAAGCACTTGAAATCGCAGAAGCACTAGTTCGTAGTG
GTGCAATTGATATCATTGTTATTGACTCCGTTGCTGCTTTAGTGCCAAAAGCTGAAATTGAAGGGGATATGGGTGATTCT
CATGTCGGCTTACAAGCCCGTTTAATGTCACAGGCATTACGTAAACTTTCAGGTTCTATTAATAAATCAAAAACGATTGC
TATTTTCATTAACCAAATTCGTGAAAAAATTGGTGTAATGTTCGGAAATCCGGAAACAACACCAGGTGGTCGTGCCCTTA
AATTCTACAGCTCTGTACGTTTAGAAGTTCGCCGTGCAGAAGCTATTAAGCAAGGTAATGATATTGTTGGTAACCGTACG
AAAATTAAAATTGTGAAAAATAAAGTAGCGCCGCCTTTCCGTACAGCTGAAGTTGATATTATGTATGGAGAAGGTATTTC
TAAAGAAGGCGAAACAGTTGATTTAGGTGTAGAATTAGACATCGTGCAAAAAAGTGGATCTTGGTATGCATATGGCGATG
AGCGTCTAGGTCAAGGACGAGAAAATGCAAAACAATATTTAAAAGAAAACACTGCTGTTTTGGAAGAAATCTCAAACAAA
ATTCGATCTTCTTATGGCATTGCTGCTAATTCTTATACAATTGCTGCTCATGAAGAAGACGAGATGGATGAAGAATTAAT
GTCACTTCTTGATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.758

93.484

0.802
  recA Latilactobacillus sakei subsp. sakei 23K

75.767

92.351

0.7
  recA Streptococcus mitis SK321

64.82

100

0.663
  recA Streptococcus mitis NCTC 12261

64.543

100

0.66
  recA Streptococcus pneumoniae Rx1

65.994

98.3

0.649
  recA Streptococcus pneumoniae D39

65.994

98.3

0.649
  recA Streptococcus pneumoniae R6

65.994

98.3

0.649
  recA Streptococcus pneumoniae TIGR4

65.994

98.3

0.649
  recA Streptococcus pyogenes NZ131

64.023

100

0.64
  recA Streptococcus mutans UA159

64.756

98.867

0.64
  recA Lactococcus lactis subsp. cremoris KW2

66.168

94.618

0.626
  recA Neisseria gonorrhoeae strain FA1090

63.401

98.3

0.623
  recA Neisseria gonorrhoeae MS11

63.401

98.3

0.623
  recA Neisseria gonorrhoeae MS11

63.401

98.3

0.623
  recA Helicobacter pylori strain NCTC11637

61.823

99.433

0.615
  recA Helicobacter pylori 26695

61.538

99.433

0.612
  recA Acinetobacter baylyi ADP1

61.207

98.584

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

97.167

0.603
  recA Glaesserella parasuis strain SC1401

60.519

98.3

0.595
  recA Ralstonia pseudosolanacearum GMI1000

64.22

92.635

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

92.351

0.589
  recA Acinetobacter baumannii D1279779

60.704

96.601

0.586
  recA Pseudomonas stutzeri DSM 10701

59.593

97.45

0.581
  recA Vibrio cholerae strain A1552

63.75

90.652

0.578
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.75

90.652

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.501

0.572