Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   VO178_RS08530 Genome accession   NZ_CP141829
Coordinates   1788058..1789317 (+) Length   419 a.a.
NCBI ID   WP_036124110.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain TZA38     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1783058..1794317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO178_RS08500 (VO178_08500) yfmH 1783128..1784426 (+) 1299 WP_324730152.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  VO178_RS08505 (VO178_08505) ymfI 1784426..1785154 (+) 729 WP_036147479.1 elongation factor P 5-aminopentanone reductase -
  VO178_RS08510 (VO178_08510) - 1785199..1785456 (+) 258 WP_008178933.1 DUF3243 domain-containing protein -
  VO178_RS08515 (VO178_08515) - 1785683..1786468 (+) 786 WP_008178931.1 DUF3388 domain-containing protein -
  VO178_RS08520 (VO178_08520) - 1786485..1787414 (+) 930 WP_175422988.1 helix-turn-helix domain-containing protein -
  VO178_RS08525 (VO178_08525) pgsA 1787462..1788040 (+) 579 WP_025113992.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  VO178_RS08530 (VO178_08530) cinA 1788058..1789317 (+) 1260 WP_036124110.1 competence/damage-inducible protein A Machinery gene
  VO178_RS08535 (VO178_08535) recA 1789479..1790540 (+) 1062 WP_036124113.1 recombinase RecA Machinery gene
  VO178_RS08540 (VO178_08540) rny 1791064..1792623 (+) 1560 WP_008178918.1 ribonuclease Y -
  VO178_RS08545 (VO178_08545) - 1792770..1793534 (+) 765 WP_324730443.1 tyrosine-protein phosphatase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45412.67 Da        Isoelectric Point: 4.8263

>NTDB_id=920023 VO178_RS08530 WP_036124110.1 1788058..1789317(+) (cinA) [Lysinibacillus fusiformis strain TZA38]
MNAEILAVGSELLLGQITNTNARFISNQLSELGINVFYHTVVGDNAKRLEQAIEVAESRADLIIFSGGLGPTKDDLTKET
IARHLGVSLEFDEVALTYIEQFFANRGRPMTENNRKQALILAGSEILANHHGMAPGMIFKNNNRTYILLPGPPKELEPMF
QFEAKPKLAAMLNDGGIIASHVMRFYGIGEAELEVQVQDILDAQTNPTVAPLASDGEVTLRVTAKAETEQQAQQLIAAKV
AEIQTLVGDYQYGVDDDSLVSKTVEMLVDNNLTISAAESLTAGLFQSELAEIPGVGNALIGGVVTYAAEAKVKHLGISQE
LIDTHGVVSGECAAAMASAIRKQFGTNIGIGLTGEAGPTAHDHQPVGTVWIGIAINDEEPLTYLLHLSGMRNTNRLRAVK
FTCHYLMQRLEERGYTKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=920023 VO178_RS08530 WP_036124110.1 1788058..1789317(+) (cinA) [Lysinibacillus fusiformis strain TZA38]
ATGAATGCTGAAATTCTTGCGGTTGGCTCAGAGCTATTATTAGGTCAAATTACGAATACGAATGCGAGATTTATCTCGAA
CCAGTTATCCGAGCTAGGCATTAATGTTTTTTACCATACAGTAGTTGGTGATAACGCAAAACGTTTAGAACAAGCTATTG
AAGTGGCAGAATCTCGTGCAGATTTAATTATATTTTCGGGAGGACTAGGACCTACGAAAGATGATTTAACAAAAGAAACG
ATTGCTCGCCATCTCGGTGTTTCTCTAGAATTTGATGAAGTTGCATTAACATATATTGAGCAGTTTTTTGCCAACCGAGG
ACGTCCTATGACGGAGAATAACCGGAAACAGGCTTTAATTCTAGCTGGAAGCGAAATATTAGCCAATCATCACGGAATGG
CGCCGGGTATGATTTTTAAAAATAATAATCGTACGTATATTTTACTCCCAGGGCCACCAAAAGAGCTTGAGCCTATGTTT
CAATTTGAGGCGAAACCTAAGCTTGCCGCGATGCTTAATGATGGAGGGATCATTGCCTCTCATGTGATGCGTTTTTATGG
GATTGGTGAGGCCGAACTTGAAGTCCAGGTACAGGATATTTTAGATGCCCAAACAAATCCAACTGTCGCTCCACTTGCGT
CGGATGGTGAGGTAACATTACGCGTAACAGCTAAAGCAGAAACCGAACAGCAAGCCCAACAACTTATTGCCGCCAAAGTA
GCAGAGATACAAACCCTTGTTGGTGACTATCAATATGGTGTGGATGATGACTCACTTGTTTCAAAGACAGTTGAAATGCT
AGTTGACAATAATCTAACTATTTCTGCTGCGGAAAGTTTAACGGCAGGGTTGTTTCAATCAGAGCTTGCGGAAATTCCAG
GGGTAGGTAACGCACTCATTGGAGGCGTAGTGACCTATGCGGCAGAAGCAAAAGTAAAGCATCTTGGTATTTCACAAGAA
TTAATAGATACACACGGTGTTGTAAGCGGTGAATGTGCTGCTGCAATGGCAAGTGCAATTCGAAAACAATTTGGGACAAA
TATCGGCATTGGGTTAACAGGAGAAGCAGGGCCTACAGCACATGACCATCAGCCAGTAGGAACGGTTTGGATTGGTATTG
CTATCAACGATGAGGAGCCACTTACATACTTACTTCATTTATCTGGTATGCGTAATACAAATCGACTCCGTGCAGTGAAA
TTTACATGCCATTATTTAATGCAGCGTTTGGAAGAACGCGGCTATACAAAACGATATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.942

98.329

0.511
  cinA Streptococcus mitis SK321

45.431

91.408

0.415
  cinA Streptococcus pneumoniae Rx1

44.909

91.408

0.411
  cinA Streptococcus pneumoniae TIGR4

44.909

91.408

0.411
  cinA Streptococcus pneumoniae R6

44.909

91.408

0.411
  cinA Streptococcus mitis NCTC 12261

44.648

91.408

0.408
  cinA Streptococcus pneumoniae D39

44.648

91.408

0.408
  cinA Streptococcus mutans UA159

44.18

90.215

0.399