Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VF946_RS00375 Genome accession   NZ_CP141824
Coordinates   66192..67340 (+) Length   382 a.a.
NCBI ID   WP_023369045.1    Uniprot ID   A0A822VL11
Organism   Streptococcus suis strain HB18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 61192..72340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF946_RS00360 ruvA 63048..63638 (+) 591 WP_011921679.1 Holliday junction branch migration protein RuvA -
  VF946_RS00365 - 64363..64932 (+) 570 WP_012774893.1 DNA-3-methyladenine glycosylase I -
  VF946_RS00370 - 64969..66140 (+) 1172 Protein_53 competence/damage-inducible protein A -
  VF946_RS00375 recA 66192..67340 (+) 1149 WP_023369045.1 recombinase RecA Machinery gene
  VF946_RS00380 spx 67576..67974 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  VF946_RS00385 - 68074..68340 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  VF946_RS00390 ruvX 68340..68759 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  VF946_RS00395 - 68771..69103 (+) 333 WP_023369048.1 DUF1292 domain-containing protein -
  VF946_RS00400 - 69310..69888 (+) 579 WP_012774895.1 nucleotidyltransferase family protein -
  VF946_RS00405 comX/sigX 69961..70227 (+) 267 WP_014635810.1 hypothetical protein Regulator
  VF946_RS00410 rpsJ 70550..70858 (+) 309 WP_238716866.1 30S ribosomal protein S10 -
  VF946_RS00415 rplC 70995..71621 (+) 627 WP_011921686.1 50S ribosomal protein L3 -
  VF946_RS00420 rplD 71646..72269 (+) 624 WP_004195490.1 50S ribosomal protein L4 -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 40805.51 Da        Isoelectric Point: 4.8910

>NTDB_id=919731 VF946_RS00375 WP_023369045.1 66192..67340(+) (recA) [Streptococcus suis strain HB18]
MAKKPTKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVATEEAPVAEEIQDVILDLDGGIELED

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=919731 VF946_RS00375 WP_023369045.1 66192..67340(+) (recA) [Streptococcus suis strain HB18]
TTGGCTAAGAAACCAACTAAGAAATTAGAAGATATTACAAAGAAATTTGGCGATGAACGTAAAAAAGCGCTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGCGCTGTCATGCGTCTTGGTGAGCGTGCTGAGCAAAAAGTTCAAGTCA
TGAGTTCAGGTAGCTTGTCAATCGACATTGCGCTTGGAGCGGGTGGCTATCCGAAAGGTCGTATCATTGAGATTTACGGT
CCTGAGAGCTCGGGTAAGACAACTGTTGCTCTACACGCAGTAGCTCAAGCCCAGAAAGATGGTGGTATTGCTGCCTTTAT
CGATGCGGAGCATGCCTTGGATCCAGCCTATGCAGCAGCTCTTGGTGTCAATATTGATGAGTTGCTCTTGTCCCAGCCAG
ACTCAGGGGAACAAGGTCTTGAAATTGCAGGCAAGCTGATCGACTCTGGTGCGGTTGACTTGGTTGTTGTTGACTCGGTT
GCAGCCCTTGTACCACGTGCAGAAATCGATGGCGATATTGGTGATAGTCATGTTGGCTTGCAGGCTCGCATGATGAGTCA
GGCCATGCGCAAACTCGGTGCATCCATCAACAAAACAAAAACAGTAGCTATTTTCATTAACCAATTACGTGAAAAAGTCG
GTGTCATGTTTGGTAACCCTGAAACAACACCTGGTGGTCGTGCGCTAAAATTCTATGCATCTGTCCGTATGGATGTTCGT
GGAAACACACAAATCAAAGGAACAGGCGACAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATTGTGAAGAA
CAAGGTGGCGCCACCATTTAAAGAAGCTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGCATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAAAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTAGCAGATAATCCAGCAATCTTTGATGAAATTGACCGCAAGATACGTGTTCATTATGGATT
GATTGAAGCAGATGGAGTTGAAGAAGTTGCGACCGAAGAAGCTCCTGTTGCGGAAGAAATCCAAGATGTTATCCTAGATC
TTGATGGCGGTATTGAATTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822VL11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

86.198

100

0.866
  recA Streptococcus pyogenes NZ131

85.34

100

0.853
  recA Streptococcus pneumoniae D39

83.854

100

0.843
  recA Streptococcus pneumoniae R6

83.854

100

0.843
  recA Streptococcus pneumoniae TIGR4

83.854

100

0.843
  recA Streptococcus pneumoniae Rx1

83.854

100

0.843
  recA Streptococcus mitis NCTC 12261

83.508

100

0.835
  recA Streptococcus mitis SK321

82.723

100

0.827
  recA Lactococcus lactis subsp. cremoris KW2

75.143

91.623

0.688
  recA Latilactobacillus sakei subsp. sakei 23K

64.507

92.932

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

86.126

0.586
  recA Acinetobacter baumannii D1279779

60.116

90.576

0.545
  recA Neisseria gonorrhoeae MS11

62.236

86.649

0.539
  recA Neisseria gonorrhoeae MS11

62.236

86.649

0.539
  recA Neisseria gonorrhoeae strain FA1090

62.236

86.649

0.539
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

87.435

0.529
  recA Pseudomonas stutzeri DSM 10701

57.386

92.147

0.529
  recA Glaesserella parasuis strain SC1401

59.118

89.005

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.944

89.267

0.526
  recA Acinetobacter baylyi ADP1

61.538

85.079

0.524
  recA Vibrio cholerae strain A1552

61.538

85.079

0.524
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

85.079

0.524
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.649

0.508
  recA Ralstonia pseudosolanacearum GMI1000

60.568

82.984

0.503
  recA Helicobacter pylori strain NCTC11637

57.879

86.387

0.5
  recA Helicobacter pylori 26695

57.879

86.387

0.5