Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   U5817_RS23550 Genome accession   NZ_CP141259
Coordinates   5028955..5029989 (+) Length   344 a.a.
NCBI ID   WP_169132395.1    Uniprot ID   -
Organism   Aromatoleum evansii strain MAY27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5023955..5034989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5817_RS23530 (U5817_23465) - 5024830..5026779 (-) 1950 WP_407279018.1 flagellar assembly protein A -
  U5817_RS23535 (U5817_23470) thiL 5026925..5027884 (+) 960 WP_407279019.1 thiamine-phosphate kinase -
  U5817_RS23540 (U5817_23475) - 5027906..5028385 (+) 480 WP_169132397.1 phosphatidylglycerophosphatase A -
  U5817_RS23545 (U5817_23480) - 5028390..5028869 (+) 480 WP_169132396.1 nicotinamide-nucleotide amidohydrolase family protein -
  U5817_RS23550 (U5817_23485) recA 5028955..5029989 (+) 1035 WP_169132395.1 recombinase RecA Machinery gene
  U5817_RS23555 (U5817_23490) recX 5030007..5030456 (+) 450 WP_169132394.1 recombination regulator RecX -
  U5817_RS23560 (U5817_23495) lptB 5030443..5031165 (+) 723 WP_169132393.1 LPS export ABC transporter ATP-binding protein -
  U5817_RS23565 (U5817_23500) rpoN/rpoN1 5031187..5032635 (+) 1449 WP_407279020.1 RNA polymerase factor sigma-54 Machinery gene
  U5817_RS23570 (U5817_23505) hpf 5032665..5032991 (+) 327 WP_169132391.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  U5817_RS23575 (U5817_23510) ptsN 5033128..5033613 (+) 486 WP_169132390.1 PTS IIA-like nitrogen regulatory protein PtsN -
  U5817_RS23580 (U5817_23515) hprK 5033582..5034523 (+) 942 WP_169132389.1 HPr(Ser) kinase/phosphatase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36774.22 Da        Isoelectric Point: 5.5876

>NTDB_id=916485 U5817_RS23550 WP_169132395.1 5028955..5029989(+) (recA) [Aromatoleum evansii strain MAY27]
MDDNKAKALAAALSQIEKQFGKGSIMRMGDGNVEKDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVI
AEMQKLGGTAAFIDAEHALDVGYAEKLGVNITDLLISQPDTGEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVVGS
ETRCKVVKNKVSPPFKEAHFDILYGEGISREGEIIDLGVEKKIVDKAGAWYSYQGDKIGQGKDNTREFLRGNPALAREIE
NKVRVAVGLKELPAEPAQPAAEAA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=916485 U5817_RS23550 WP_169132395.1 5028955..5029989(+) (recA) [Aromatoleum evansii strain MAY27]
ATGGACGACAACAAGGCCAAGGCCCTCGCCGCCGCGCTCTCGCAGATCGAGAAGCAGTTCGGCAAGGGTTCGATCATGCG
GATGGGCGACGGCAACGTCGAGAAGGACATCCAGACCGTCTCGACCGGCTCGCTCGGACTCGACATCGCGCTCGGCCTCG
GCGGACTGCCGCGCGGCCGCGTCGTCGAGATCTACGGCCCGGAATCGTCCGGCAAGACCACGCTGACGCTGCAGGTCATT
GCCGAGATGCAGAAGCTCGGCGGCACCGCCGCCTTCATCGACGCCGAGCACGCGCTCGACGTCGGCTACGCCGAAAAGCT
CGGCGTGAACATCACCGATCTGCTGATCTCGCAGCCCGACACCGGCGAGCAGGCGCTCGAGATCGCCGACATGCTGGTGC
GCTCGGGCGGCGTCGACATCGTCGTCATCGACTCGGTCGCGGCACTCACCCCCAAGGCCGAAATCGAGGGCGAGATGGGC
GACCAGCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGCCAACATCAAGCGCACCAACAC
GCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAGACCACCACGGGCGGCAATG
CGCTCAAGTTCTACGCCTCCGTGCGCCTCGACATCCGCCGTACCGGCGCGATCAAGAAGGGCGACGAGGTCGTCGGCTCG
GAGACGCGCTGCAAGGTCGTCAAGAACAAGGTCTCGCCCCCGTTCAAGGAAGCGCACTTCGACATTCTCTACGGAGAGGG
CATCTCGCGCGAAGGCGAGATCATCGACCTCGGCGTCGAGAAGAAGATCGTCGACAAGGCGGGCGCCTGGTACTCCTACC
AGGGCGACAAGATCGGCCAGGGCAAGGACAACACGCGCGAGTTCCTGCGCGGCAATCCGGCGCTCGCGCGCGAGATCGAG
AACAAGGTGCGCGTCGCGGTCGGCCTCAAGGAACTGCCGGCCGAGCCCGCGCAACCGGCTGCCGAGGCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.445

92.733

0.765
  recA Pseudomonas stutzeri DSM 10701

74.383

94.186

0.701
  recA Vibrio cholerae strain A1552

73.457

94.186

0.692
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.457

94.186

0.692
  recA Acinetobacter baylyi ADP1

73.148

94.186

0.689
  recA Acinetobacter baumannii D1279779

72.84

94.186

0.686
  recA Neisseria gonorrhoeae MS11

69.822

98.256

0.686
  recA Neisseria gonorrhoeae MS11

69.822

98.256

0.686
  recA Neisseria gonorrhoeae strain FA1090

69.822

98.256

0.686
  recA Glaesserella parasuis strain SC1401

70.497

93.605

0.66
  recA Helicobacter pylori strain NCTC11637

63.557

99.709

0.634
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.463

95.349

0.634
  recA Helicobacter pylori 26695

63.265

99.709

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

65.046

95.64

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.35

96.221

0.619
  recA Latilactobacillus sakei subsp. sakei 23K

63.063

96.802

0.61
  recA Streptococcus mutans UA159

61.562

96.802

0.596
  recA Streptococcus mitis SK321

62.006

95.64

0.593
  recA Streptococcus mitis NCTC 12261

62.006

95.64

0.593
  recA Streptococcus pneumoniae Rx1

61.702

95.64

0.59
  recA Streptococcus pneumoniae D39

61.702

95.64

0.59
  recA Streptococcus pneumoniae R6

61.702

95.64

0.59
  recA Streptococcus pneumoniae TIGR4

61.702

95.64

0.59
  recA Streptococcus pyogenes NZ131

61.212

95.93

0.587
  recA Lactococcus lactis subsp. cremoris KW2

60.245

95.058

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.185

94.186

0.567