Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   U5817_RS23565 Genome accession   NZ_CP141259
Coordinates   5031187..5032635 (+) Length   482 a.a.
NCBI ID   WP_407279020.1    Uniprot ID   -
Organism   Aromatoleum evansii strain MAY27     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5026187..5037635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5817_RS23535 (U5817_23470) thiL 5026925..5027884 (+) 960 WP_407279019.1 thiamine-phosphate kinase -
  U5817_RS23540 (U5817_23475) - 5027906..5028385 (+) 480 WP_169132397.1 phosphatidylglycerophosphatase A -
  U5817_RS23545 (U5817_23480) - 5028390..5028869 (+) 480 WP_169132396.1 nicotinamide-nucleotide amidohydrolase family protein -
  U5817_RS23550 (U5817_23485) recA 5028955..5029989 (+) 1035 WP_169132395.1 recombinase RecA Machinery gene
  U5817_RS23555 (U5817_23490) recX 5030007..5030456 (+) 450 WP_169132394.1 recombination regulator RecX -
  U5817_RS23560 (U5817_23495) lptB 5030443..5031165 (+) 723 WP_169132393.1 LPS export ABC transporter ATP-binding protein -
  U5817_RS23565 (U5817_23500) rpoN/rpoN1 5031187..5032635 (+) 1449 WP_407279020.1 RNA polymerase factor sigma-54 Machinery gene
  U5817_RS23570 (U5817_23505) hpf 5032665..5032991 (+) 327 WP_169132391.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  U5817_RS23575 (U5817_23510) ptsN 5033128..5033613 (+) 486 WP_169132390.1 PTS IIA-like nitrogen regulatory protein PtsN -
  U5817_RS23580 (U5817_23515) hprK 5033582..5034523 (+) 942 WP_169132389.1 HPr(Ser) kinase/phosphatase -
  U5817_RS23585 (U5817_23520) ilvA 5034610..5036130 (+) 1521 WP_407279021.1 threonine ammonia-lyase, biosynthetic -
  U5817_RS23590 (U5817_23525) - 5036109..5036726 (-) 618 WP_169132387.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 482 a.a.        Molecular weight: 53586.26 Da        Isoelectric Point: 4.7928

>NTDB_id=916486 U5817_RS23565 WP_407279020.1 5031187..5032635(+) (rpoN/rpoN1) [Aromatoleum evansii strain MAY27]
MKPSLQLKISQHLTLTPQLQQSIKLLQLSTLELNQELERFLLENPMLEREDGDGSDFSPGAAQGSSEPSEAAGNQAETPA
SPEEAHGESEPASFDEAGEWSSASSGSSNRDDDDDTDFQELQAAGTSLRDHLDQQVSLSPLSDRDRALVRFIIEALDEDG
YLNQSLEELLPLLPPELEYDLDDLSIALHHVQNLDPAGIGARNPQECLSLQLRAMPSCPTRDLALKIVDEHLDLLAERNF
LRIKRATGCDDDALRAAHALICRLDPHPGSQHSVQETRYILPDVVVRKVRNRWTVTLNPEAMPKLRINSLYASILQQNRG
SGGALTSQLQEARWLIKNVQQRFDTILRVSQAIVDQQRQFFDYGDVAMRPLTLREIADQLELHESTVSRVTTQKFMATPR
GVFELKYFFGSHVATDTGGAASSTAIRALIRQLVEAEDRKKPLSDAKIAELLGQQGIVVARRTIAKYRESLNIPPVSLRK
AI

Nucleotide


Download         Length: 1449 bp        

>NTDB_id=916486 U5817_RS23565 WP_407279020.1 5031187..5032635(+) (rpoN/rpoN1) [Aromatoleum evansii strain MAY27]
ATGAAACCGTCCCTCCAGCTCAAGATCTCCCAGCACCTCACGCTGACGCCGCAGCTGCAGCAATCGATCAAGCTGCTGCA
GCTGTCCACGCTGGAGCTGAACCAGGAGCTGGAACGCTTCCTCCTCGAGAATCCCATGCTCGAGCGCGAGGACGGCGACG
GCAGCGATTTTTCGCCGGGCGCGGCCCAGGGCTCGAGCGAGCCGAGCGAAGCCGCCGGCAACCAGGCCGAAACACCTGCC
TCCCCCGAGGAGGCGCATGGCGAGAGCGAGCCGGCAAGCTTCGACGAAGCCGGCGAATGGTCGAGCGCGAGCAGCGGCTC
CTCGAACCGCGACGATGACGACGACACCGATTTCCAGGAACTGCAGGCCGCCGGCACCAGCCTGCGCGACCACCTCGACC
AGCAGGTGAGCCTGTCGCCGCTGTCCGACCGCGACCGCGCGCTGGTGCGCTTCATCATCGAGGCGCTGGACGAGGACGGC
TACCTCAACCAGTCGCTCGAAGAACTGCTGCCGCTGCTGCCGCCCGAGCTCGAATACGACCTCGACGACCTCTCGATCGC
GCTGCACCACGTACAGAACCTCGACCCGGCCGGCATCGGCGCGCGCAACCCGCAGGAATGCCTGAGCCTGCAGCTCAGGG
CGATGCCCTCCTGCCCGACGCGCGACCTCGCGCTGAAGATCGTCGACGAGCACCTCGACCTGCTCGCCGAGCGCAACTTC
CTGCGCATCAAGCGCGCCACCGGCTGCGACGACGACGCGCTGCGCGCCGCGCACGCGCTGATCTGCCGTCTCGACCCGCA
TCCGGGCTCCCAGCACTCGGTGCAGGAGACGCGCTACATCCTGCCGGACGTCGTCGTGCGCAAGGTGCGCAACCGCTGGA
CGGTCACGCTCAACCCCGAGGCGATGCCCAAGCTGCGCATCAATTCGCTGTACGCCAGCATCCTGCAGCAGAACCGCGGA
TCGGGCGGCGCACTCACCAGCCAGCTGCAGGAAGCACGCTGGCTGATCAAGAACGTGCAACAGCGTTTCGACACCATCCT
GCGGGTTTCGCAGGCGATCGTTGACCAGCAGCGGCAGTTCTTCGATTATGGAGATGTGGCGATGCGACCCCTGACGTTGA
GGGAGATCGCGGACCAGCTCGAGCTGCACGAGTCGACGGTCTCGCGGGTCACGACGCAGAAGTTCATGGCCACACCGCGC
GGCGTGTTTGAACTGAAGTATTTTTTCGGCAGCCACGTTGCCACCGACACCGGTGGGGCGGCATCTTCCACGGCGATTCG
AGCGCTGATTCGCCAGCTGGTGGAGGCCGAAGACAGGAAAAAGCCCCTGTCCGACGCGAAAATTGCCGAGTTGTTGGGCC
AGCAGGGTATCGTGGTGGCACGCAGGACGATCGCGAAGTACCGCGAGTCACTCAATATCCCGCCGGTCAGCCTGCGCAAA
GCGATCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(118-311)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(325-480)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

55.578

100

0.579