Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L6430_RS16415 Genome accession   NZ_AP025342
Coordinates   3236843..3237889 (+) Length   348 a.a.
NCBI ID   WP_043926427.1    Uniprot ID   A0AA90F4G0
Organism   Bacillus paralicheniformis strain J41TS8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3231843..3242889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS16390 - 3232540..3232797 (+) 258 WP_020451452.1 DUF3243 domain-containing protein -
  L6430_RS16395 - 3233045..3233836 (+) 792 WP_003181917.1 YmfK family protein -
  L6430_RS16400 - 3233854..3234756 (+) 903 WP_025811432.1 helix-turn-helix domain-containing protein -
  L6430_RS16405 pgsA 3234823..3235404 (+) 582 WP_003181921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L6430_RS16410 cinA 3235424..3236674 (+) 1251 WP_059230547.1 competence/damage-inducible protein A Machinery gene
  L6430_RS16415 recA 3236843..3237889 (+) 1047 WP_043926427.1 recombinase RecA Machinery gene
  L6430_RS16420 rny 3238231..3239790 (+) 1560 WP_020451457.1 ribonuclease Y -
  L6430_RS16425 - 3239877..3240674 (+) 798 WP_059230544.1 TIGR00282 family metallophosphoesterase -
  L6430_RS16430 spoVS 3240876..3241136 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  L6430_RS16435 - 3241242..3242162 (+) 921 WP_020451459.1 dipeptidase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37779.90 Da        Isoelectric Point: 4.7097

>NTDB_id=91484 L6430_RS16415 WP_043926427.1 3236843..3237889(+) (recA) [Bacillus paralicheniformis strain J41TS8]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTETRISTVPSGSLALDTALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVDIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTGGVAPAQEDDAQAQEELEF

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=91484 L6430_RS16415 WP_043926427.1 3236843..3237889(+) (recA) [Bacillus paralicheniformis strain J41TS8]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCGCTTAAACAAATAGAAAAGCAGTTTGGTAAAGGTTCGATTATGAAACT
CGGCGAACAAACTGAAACGAGAATTTCAACAGTTCCGAGCGGTTCTTTAGCGCTCGACACGGCTCTTGGAGTGGGCGGAT
ACCCGCGCGGCCGGATTATTGAAGTATACGGGCCTGAAAGCTCCGGTAAAACGACGGTGGCGCTTCATGCGATTGCCGAA
GTTCAGCAGCAGGGCGGACAGGCGGCGTTCATCGACGCCGAACACGCGCTCGACCCCGTCTATGCGCAAAAGCTGGGTGT
CGACATTGATGAGCTTTTGCTGTCACAGCCTGATACGGGCGAGCAGGCGCTCGAAATTGCAGAAGCTCTTGTCAGAAGCG
GAGCGGTGGATATCGTTGTCATCGACTCTGTGGCAGCGCTTGTGCCGAAAGCCGAAATCGAAGGAGACATGGGGGATTCC
CACGTCGGTTTGCAGGCCAGACTGATGTCTCAAGCGCTTCGTAAGCTTTCCGGAGCGATCAATAAATCAAAGACCATCGC
GATCTTTATTAACCAGATTCGTGAAAAAGTCGGTGTCATGTTTGGAAATCCTGAGACGACACCAGGCGGAAGAGCGCTGA
AATTCTACTCTTCTGTCCGCCTTGAAGTGCGCCGTGCAGAGCAGCTGAAACAAGGCAACGATGTCATGGGGAACAAGACG
AAAATCAAAGTCGTGAAAAACAAAGTGGCCCCTCCGTTCCGGACAGCCGAAGTGGACATTATGTACGGGGAAGGGATTTC
AAAAGAAGGGGAAATCATCGACCTCGGAACAGAGCTTGACATCGTTCAAAAGAGCGGTGCATGGTACTCTTATCAGGAGG
AGCGTCTTGGACAAGGCCGTGAAAACGCCAAACAGTTCCTGAAAGAAAACAAGGACATCCTTTTGATGATTCAAGAGCAG
ATCCGGGAGCACTACGGTTTGGACACCGGAGGCGTTGCTCCTGCGCAGGAAGACGATGCCCAAGCTCAGGAAGAACTCGA
ATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.687

95.402

0.922
  recA Latilactobacillus sakei subsp. sakei 23K

74.462

93.391

0.695
  recA Streptococcus mitis NCTC 12261

67.442

98.851

0.667
  recA Streptococcus mitis SK321

67.052

99.425

0.667
  recA Streptococcus pneumoniae D39

68.769

95.69

0.658
  recA Streptococcus pneumoniae Rx1

68.769

95.69

0.658
  recA Streptococcus pneumoniae R6

68.769

95.69

0.658
  recA Streptococcus pneumoniae TIGR4

68.769

95.69

0.658
  recA Streptococcus mutans UA159

68.693

94.54

0.649
  recA Streptococcus pyogenes NZ131

67.988

94.253

0.641
  recA Lactococcus lactis subsp. cremoris KW2

66.364

94.828

0.629
  recA Neisseria gonorrhoeae strain FA1090

65.749

93.966

0.618
  recA Neisseria gonorrhoeae MS11

65.749

93.966

0.618
  recA Neisseria gonorrhoeae MS11

65.749

93.966

0.618
  recA Ralstonia pseudosolanacearum GMI1000

66.049

93.103

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.426

97.126

0.606
  recA Helicobacter pylori 26695

64.923

93.391

0.606
  recA Helicobacter pylori strain NCTC11637

64.923

93.391

0.606
  recA Acinetobacter baumannii D1279779

61.721

96.839

0.598
  recA Glaesserella parasuis strain SC1401

59.884

98.851

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.997

93.966

0.592
  recA Pseudomonas stutzeri DSM 10701

59.942

98.276

0.589
  recA Vibrio cholerae strain A1552

63.863

92.241

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

92.241

0.589
  recA Acinetobacter baylyi ADP1

63.043

92.529

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.372

92.816

0.56

Multiple sequence alignment