Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   L6430_RS16410 Genome accession   NZ_AP025342
Coordinates   3235424..3236674 (+) Length   416 a.a.
NCBI ID   WP_059230547.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3230424..3241674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS16385 ymfI 3231738..3232469 (+) 732 WP_020451451.1 elongation factor P 5-aminopentanone reductase -
  L6430_RS16390 - 3232540..3232797 (+) 258 WP_020451452.1 DUF3243 domain-containing protein -
  L6430_RS16395 - 3233045..3233836 (+) 792 WP_003181917.1 YmfK family protein -
  L6430_RS16400 - 3233854..3234756 (+) 903 WP_025811432.1 helix-turn-helix domain-containing protein -
  L6430_RS16405 pgsA 3234823..3235404 (+) 582 WP_003181921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L6430_RS16410 cinA 3235424..3236674 (+) 1251 WP_059230547.1 competence/damage-inducible protein A Machinery gene
  L6430_RS16415 recA 3236843..3237889 (+) 1047 WP_043926427.1 recombinase RecA Machinery gene
  L6430_RS16420 rny 3238231..3239790 (+) 1560 WP_020451457.1 ribonuclease Y -
  L6430_RS16425 - 3239877..3240674 (+) 798 WP_059230544.1 TIGR00282 family metallophosphoesterase -
  L6430_RS16430 spoVS 3240876..3241136 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45572.91 Da        Isoelectric Point: 4.9155

>NTDB_id=91483 L6430_RS16410 WP_059230547.1 3235424..3236674(+) (cinA) [Bacillus paralicheniformis strain J41TS8]
MKLERKAEIIAVGSELLLGQIANTNAQFISRHLAEIGINVFYHMAVGDNPERLKQVIQTAQQRSDFIIFSGGLGPTKDDL
TKETIAEVVGRPLQLDDEAFESIQDYFKKTNREMSPNNRKQALILEGSDVLPNRFGMAPGMLLEHESRFYMLLPGPPKEL
EPMFENEAKPLILEKLGSKEKIVSRVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHADPAETNRLL
KETEDLILERVGEFFYGYDDTSLAEELAKACRSKGMTLAAAESFTGGLFSSWLTEMSGASEYFKGGAVCYTNELKVSAAG
VAEDTLQRYGAVSAQCAKELAAGIRVKTGSDIGISFTGVAGPNTQEGHPAGKVFIGISVKDQAEEAFEFQFAGSRSAVRK
RSAKYGCHLLLKMMEK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=91483 L6430_RS16410 WP_059230547.1 3235424..3236674(+) (cinA) [Bacillus paralicheniformis strain J41TS8]
ATGAAGTTGGAAAGAAAAGCGGAAATTATCGCTGTCGGTTCTGAGCTTCTGCTCGGACAAATCGCTAATACAAATGCTCA
GTTTATCAGCAGGCATTTAGCCGAAATCGGCATTAACGTCTTTTATCACATGGCGGTGGGAGACAACCCGGAACGCCTTA
AACAAGTGATTCAGACAGCTCAGCAAAGGTCTGACTTCATCATTTTTTCGGGAGGCCTCGGACCGACGAAAGACGATCTG
ACAAAAGAAACGATCGCTGAAGTTGTCGGGCGTCCTCTTCAGCTCGACGATGAAGCCTTCGAATCGATTCAGGATTACTT
CAAAAAAACGAACCGGGAGATGTCGCCGAACAACCGCAAACAGGCGCTGATCCTTGAAGGCTCAGACGTGCTGCCAAACC
GCTTCGGGATGGCTCCGGGAATGCTGCTTGAGCATGAATCGCGCTTTTATATGCTTCTGCCGGGACCTCCGAAAGAGCTG
GAGCCGATGTTTGAAAACGAAGCGAAGCCGCTGATTTTGGAAAAACTCGGCTCGAAGGAAAAGATCGTCTCAAGGGTACT
GCGGTTCTTCGGCATCGGAGAATCCCAGCTTGAAACCGATTTGGAAGATCTCATCGATGCGCAGACTAATCCGACAATCG
CCCCGCTTGCGGCCGACGGGGAAGTCACGCTCAGGCTCACGGCAAAGCATGCGGATCCGGCGGAGACAAACCGCTTGTTA
AAAGAAACGGAAGACCTCATTCTGGAGCGGGTCGGAGAGTTCTTTTACGGATATGATGATACATCTCTTGCAGAAGAGCT
TGCGAAAGCATGCAGGAGCAAGGGAATGACCCTGGCTGCTGCGGAAAGCTTTACAGGCGGGCTTTTTTCCAGCTGGCTGA
CGGAAATGAGCGGCGCTTCGGAATATTTCAAAGGCGGCGCCGTCTGCTACACAAACGAATTGAAAGTGTCAGCGGCCGGC
GTTGCCGAAGACACGCTGCAGCGCTACGGTGCGGTCAGCGCGCAATGCGCAAAAGAGCTCGCCGCAGGCATCAGAGTCAA
AACAGGAAGCGATATCGGCATCAGCTTTACTGGAGTAGCCGGGCCGAATACGCAAGAAGGCCATCCGGCAGGAAAGGTGT
TTATCGGCATCTCCGTGAAGGACCAGGCTGAAGAAGCGTTCGAATTTCAGTTCGCCGGATCGAGGTCTGCGGTGCGAAAG
CGTTCTGCCAAATACGGCTGCCATCTGTTGCTGAAAATGATGGAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

76.442

100

0.764
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.474
  cinA Streptococcus mitis SK321

46.539

100

0.469
  cinA Streptococcus pneumoniae R6

46.539

100

0.469
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.469
  cinA Streptococcus mitis NCTC 12261

46.539

100

0.469
  cinA Streptococcus pneumoniae D39

46.301

100

0.466
  cinA Streptococcus mutans UA159

45.894

99.519

0.457
  cinA Streptococcus suis isolate S10

40.657

95.192

0.387

Multiple sequence alignment