Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SO574_RS11140 Genome accession   NZ_CP140102
Coordinates   2473512..2474555 (-) Length   347 a.a.
NCBI ID   WP_322803109.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain VA-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2468512..2479555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO574_RS11125 (SO574_11125) - 2468695..2469882 (-) 1188 WP_221068106.1 aspartate kinase -
  SO574_RS11130 (SO574_11130) alaS 2470082..2472679 (-) 2598 WP_322803107.1 alanine--tRNA ligase -
  SO574_RS11135 (SO574_11135) recX 2472822..2473289 (-) 468 WP_322803108.1 recombination regulator RecX -
  SO574_RS11140 (SO574_11140) recA 2473512..2474555 (-) 1044 WP_322803109.1 recombinase RecA Machinery gene
  SO574_RS11145 (SO574_11145) pncC 2474756..2475238 (-) 483 WP_322803110.1 nicotinamide-nucleotide amidase -
  SO574_RS11150 (SO574_11150) mutS 2475323..2477884 (+) 2562 WP_322803111.1 DNA mismatch repair protein MutS -
  SO574_RS11155 (SO574_11155) rpoS 2477976..2478962 (-) 987 WP_322803112.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37498.97 Da        Isoelectric Point: 4.9743

>NTDB_id=912524 SO574_RS11140 WP_322803109.1 2473512..2474555(-) (recA) [Vibrio alfacsensis strain VA-1]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANSCNFLRENPEIAKTIDT
KLREMLLSPALPEAPEPGEKSEQEEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=912524 SO574_RS11140 WP_322803109.1 2473512..2474555(-) (recA) [Vibrio alfacsensis strain VA-1]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
TCTTGGCGACAACCGCACAATGGACGTAGAAACCATTTCAACGGGTTCTCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GCCTGCCAATGGGTCGTATCGTAGAAATCTACGGTCCAGAGTCTTCAGGCAAAACAACGCTAACACTAGAGCTTATCGCT
GCTGCACAACGTGAAGGTAAAACTTGTGCGTTTATCGATGCAGAGCACGCGCTAGACCCTGTATACGCGAAGAAGCTTGG
TGTTGATATCGACGCACTGTTAGTTTCTCAGCCAGATACGGGTGAGCAAGCTCTAGAAATCTGTGACGCACTGGCACGTT
CTGGTGCTATCGACGTTATGGTTGTCGATTCAGTAGCTGCACTTACACCAAAAGCAGAAATTGAAGGTGAAATGGGCGAC
AGCCACATGGGCCTTCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTTACAGGTAACCTAAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAGACGACTACGGGTGGTAACGCGC
TTAAGTTCTACGCTTCTGTTCGTCTAGATATTCGCCGTACTGGTGCAATCAAAGAGGGTGATGAGGTTGTTGGTAACGAA
ACTCGCATCAAAGTCGTTAAGAACAAGATTGCAGCACCGTTTAAAGAAGCAAACACGCAAATCATGTACGGTCAAGGTTT
CAACCGTGAAGGTGAATTGATCGACCTAGGCGTTAAGCACAAGCTAGTAGAGAAAGCAGGTGCTTGGTACAGCTATAACG
GTGATAAGATTGGTCAAGGTAAAGCGAACTCTTGTAACTTCCTACGTGAAAACCCAGAGATTGCTAAGACGATCGATACA
AAACTTCGTGAAATGCTGCTTTCTCCAGCACTACCTGAAGCGCCAGAGCCAGGTGAAAAATCAGAGCAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

95.137

94.813

0.902
  recA Vibrio cholerae strain A1552

95.137

94.813

0.902
  recA Acinetobacter baylyi ADP1

71.965

99.712

0.718
  recA Pseudomonas stutzeri DSM 10701

74.924

94.236

0.706
  recA Acinetobacter baumannii D1279779

74.695

94.524

0.706
  recA Glaesserella parasuis strain SC1401

70.859

93.948

0.666
  recA Neisseria gonorrhoeae MS11

69.018

93.948

0.648
  recA Neisseria gonorrhoeae MS11

69.018

93.948

0.648
  recA Neisseria gonorrhoeae strain FA1090

69.018

93.948

0.648
  recA Ralstonia pseudosolanacearum GMI1000

72.026

89.625

0.646
  recA Helicobacter pylori strain NCTC11637

60.29

99.424

0.599
  recA Helicobacter pylori 26695

60

99.424

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.577

91.931

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.507

0.582
  recA Streptococcus pneumoniae R6

61.92

93.084

0.576
  recA Streptococcus pneumoniae Rx1

61.92

93.084

0.576
  recA Streptococcus pneumoniae D39

61.92

93.084

0.576
  recA Streptococcus pneumoniae TIGR4

61.92

93.084

0.576
  recA Streptococcus mutans UA159

61.231

93.66

0.573
  recA Streptococcus mitis NCTC 12261

61.61

93.084

0.573
  recA Streptococcus mitis SK321

61.3

93.084

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.517

95.389

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

57.771

98.271

0.568
  recA Streptococcus pyogenes NZ131

60.308

93.66

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

92.507

0.565
  recA Lactococcus lactis subsp. cremoris KW2

59.752

93.084

0.556