Detailed information NTG0912526

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SO574_RS11155
• Genome accession: NZ_CP140102
• Coordinates: 2477976..2478962 (-)
• Length: 328 a.a.
• NCBI ID: WP_322803112.1
• Uniprot ID: -
• Organism: Vibrio alfacsensis strain VA-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2472976..2483962

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SO574_RS11140 (SO574_11140)	recA	2473512..2474555 (-)	1044	WP_322803109.1	recombinase RecA	Machinery gene
SO574_RS11145 (SO574_11145)	pncC	2474756..2475238 (-)	483	WP_322803110.1	nicotinamide-nucleotide amidase	-
SO574_RS11150 (SO574_11150)	mutS	2475323..2477884 (+)	2562	WP_322803111.1	DNA mismatch repair protein MutS	-
SO574_RS11155 (SO574_11155)	rpoS	2477976..2478962 (-)	987	WP_322803112.1	RNA polymerase sigma factor RpoS	Regulator
SO574_RS11160 (SO574_11160)	-	2479043..2479966 (-)	924	WP_322803113.1	peptidoglycan DD-metalloendopeptidase family protein	-
SO574_RS11165 (SO574_11165)	-	2479981..2480607 (-)	627	WP_128810186.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
SO574_RS11170 (SO574_11170)	surE	2480607..2481383 (-)	777	WP_322803114.1	5'/3'-nucleotidase SurE	-
SO574_RS11175 (SO574_11175)	truD	2481383..2482426 (-)	1044	WP_322803115.1	tRNA pseudouridine(13) synthase TruD	-
SO574_RS11180 (SO574_11180)	ispF	2482473..2482949 (-)	477	WP_211915975.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
SO574_RS11185 (SO574_11185)	ispD	2482964..2483671 (-)	708	WP_322803116.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
SO574_RS11190 (SO574_11190)	ftsB	2483676..2483954 (-)	279	WP_128810181.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37357.49 Da
• Isoelectric Point: 4.9572

>NTDB_id=912526 SO574_RS11155 WP_322803112.1 2477976..2478962(-) (rpoS) [Vibrio alfacsensis strain VA-1]
MSISNTVTKVEEFGYDKTAVQSTASELGKTPTKQTKAVVREELDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVSNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=912526 SO574_RS11155 WP_322803112.1 2477976..2478962(-) (rpoS) [Vibrio alfacsensis strain VA-1]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGGTTATGACAAGACGGCAGTGCAAAGTACAGCAAGCGAACT
TGGAAAAACGCCGACTAAACAAACCAAAGCGGTTGTACGCGAAGAGCTTGACGCGAGCAACAAGAGCCTAGATGCCACTC
AACTGTATCTAGGTGAGATAGGTTTCTCACCACTACTTACGGCAGAGGAAGAAGTACTCTATGCTCGTCGCGCGCTACGA
GGTGATGAAGCTGCGCGCAAACGAATGATTGAGAGTAACTTACGTCTAGTAGTAAAGATTTCTCGTCGATACAGCAACCG
TGGTTTAGCGCTGCTTGATCTTATTGAAGAAGGCAACCTCGGTTTGATCCGTGCGGTAGAGAAGTTTGACCCAGAGCGAG
GCTTCCGTTTTTCTACTTATGCGACATGGTGGATCCGCCAAACTATCGAACGCGCATTGATGAACCAAACACGCACGATT
CGCCTACCAATTCATGTTGTGAAAGAGCTGAACATTTATCTGCGCACAGCGCGTGAACTCTCTCAGAAGCTCGATCATGA
ACCAACGGCAGAAGAAATTGCCGCACAGTTGGATATCCCTGTTGAAGACGTCAGCAAGATGCTGCGTCTGAATGAGCGCA
TTAGTTCGGTCGACACACCTATTGGTGGTGATGGCGAAAAGGCTCTCCTCGACATTATCCCTGATGTAAGTAACTCTGAT
CCGGAAGTATCAACACAAGATGATGACATTAAGTCTTCACTGATCCATTGGCTAGAAGAGCTAAATCCGAAACAAAAAGA
GGTACTAGCGCGTCGTTTTGGCCTATTAGGTTACGAGCCATCAACGCTTGAAGAAGTGGGGCGTGAGATTGGTCTAACGC
GTGAGCGTGTTCGTCAGATACAAGTTGAAGGTTTGCGTCGATTACGCGAGATCTTGATCAAACAAGGTTTGAACATGGAA
AACCTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854