Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   UM396_RS06640 Genome accession   NZ_CP139723
Coordinates   1264761..1265576 (+) Length   271 a.a.
NCBI ID   WP_225995659.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain OXR-76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1259761..1270576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UM396_RS06625 (UM396_06625) cinA 1260319..1261563 (+) 1245 WP_063166235.1 competence/damage-inducible protein A Machinery gene
  UM396_RS06630 (UM396_06630) - 1261744..1262037 (+) 294 Protein_1250 DNA recombination/repair protein RecA -
  UM396_RS06635 (UM396_06635) ltrA 1262873..1264690 (+) 1818 WP_322311092.1 group II intron reverse transcriptase/maturase -
  UM396_RS06640 (UM396_06640) recA 1264761..1265576 (+) 816 WP_225995659.1 recombinase RecA Machinery gene
  UM396_RS06645 (UM396_06645) rny 1266053..1267609 (+) 1557 WP_063166231.1 ribonuclease Y -
  UM396_RS06650 (UM396_06650) - 1267719..1268513 (+) 795 WP_322311093.1 TIGR00282 family metallophosphoesterase -
  UM396_RS06655 (UM396_06655) spoVS 1268643..1268903 (+) 261 WP_008878506.1 stage V sporulation protein SpoVS -
  UM396_RS06660 (UM396_06660) - 1268996..1269919 (+) 924 WP_063166229.1 dipeptidase -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 29579.70 Da        Isoelectric Point: 5.1146

>NTDB_id=910719 UM396_RS06640 WP_225995659.1 1264761..1265576(+) (recA) [Geobacillus subterraneus strain OXR-76]
MKRGKIAPPGNAEGDYYLSLSLDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEG
EMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDM
VGNKTKIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDMASELDIVQKSGSWYSYKDERLGQGRENAKQFLKENPHIAD
EIARAIRKHYGIDAGEAGGEPQQDEFGLLDE

Nucleotide


Download         Length: 816 bp        

>NTDB_id=910719 UM396_RS06640 WP_225995659.1 1264761..1265576(+) (recA) [Geobacillus subterraneus strain OXR-76]
GTGAAGCGGGGGAAAATAGCCCCTCCGGGTAACGCCGAGGGTGACTATTACCTATCGCTATCGCTTGACCCGGTTTATGC
ACAAAAATTAGGGGTCAACATCGATGAATTGCTGCTTTCCCAACCCGACACGGGCGAGCAGGCGCTCGAAATTGCCGAAG
CGCTCGTACGAAGCGGTGCGGTCGATATTATCGTCATCGACTCAGTGGCGGCGCTCGTGCCGAAAGCAGAAATTGAAGGG
GAGATGGGCGACGCCCACGTCGGCTTGCAAGCCCGCCTCATGTCGCAGGCGCTCCGCAAGCTGTCCGGCGCCATTAACAA
ATCGAAAACGATCGCCATCTTCATCAACCAAATTCGCGAAAAAGTTGGGGTTATGTTTGGCAATCCGGAAACGACGCCGG
GGGGACGGGCGCTTAAGTTTTACGCTTCCGTCCGCTTAGAGGTGCGCCGCGCCGAGCAAATTAAACAAGGCAATGACATG
GTGGGCAACAAAACGAAAATCAAAGTCGTCAAAAACAAAGTCGCTCCGCCGTTTAAAACGGCCGACGTCGACATTATGTA
CGGCGAAGGCATTTCCCGCGAAGGGGAAATTATCGATATGGCGTCCGAGCTTGACATCGTGCAAAAGAGCGGTTCGTGGT
ATTCGTACAAAGACGAACGGCTCGGCCAAGGACGGGAAAACGCGAAGCAGTTTTTGAAAGAAAACCCTCACATCGCCGAC
GAGATCGCCCGCGCCATCCGCAAACATTACGGCATCGATGCCGGCGAGGCGGGCGGCGAACCGCAGCAAGACGAGTTCGG
GCTGCTTGACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.983

85.978

0.756
  recA Latilactobacillus sakei subsp. sakei 23K

76.724

85.609

0.657
  recA Streptococcus mitis NCTC 12261

67.717

93.727

0.635
  recA Streptococcus mitis SK321

66.929

93.727

0.627
  recA Streptococcus pneumoniae D39

70

88.561

0.62
  recA Streptococcus pneumoniae Rx1

70

88.561

0.62
  recA Streptococcus pneumoniae R6

70

88.561

0.62
  recA Streptococcus pneumoniae TIGR4

70

88.561

0.62
  recA Streptococcus pyogenes NZ131

69.362

86.716

0.601
  recA Streptococcus mutans UA159

69.068

87.085

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.447

90.775

0.594
  recA Ralstonia pseudosolanacearum GMI1000

68.534

85.609

0.587
  recA Lactococcus lactis subsp. cremoris KW2

66.949

87.085

0.583
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.667

84.133

0.561
  recA Vibrio cholerae strain A1552

66.667

84.133

0.561
  recA Acinetobacter baumannii D1279779

62.041

90.406

0.561
  recA Neisseria gonorrhoeae MS11

65.236

85.978

0.561
  recA Neisseria gonorrhoeae MS11

65.236

85.978

0.561
  recA Neisseria gonorrhoeae strain FA1090

65.236

85.978

0.561
  recA Pseudomonas stutzeri DSM 10701

61.382

90.775

0.557
  recA Glaesserella parasuis strain SC1401

64.758

83.764

0.542
  recA Helicobacter pylori strain NCTC11637

63.362

85.609

0.542
  recA Helicobacter pylori 26695

63.362

85.609

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.661

85.978

0.539
  recA Acinetobacter baylyi ADP1

63.319

84.502

0.535
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.78

82.288

0.517