Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   UM396_RS06625 Genome accession   NZ_CP139723
Coordinates   1260319..1261563 (+) Length   414 a.a.
NCBI ID   WP_063166235.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain OXR-76     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1255319..1266563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UM396_RS06595 (UM396_06595) yfmH 1255432..1256721 (+) 1290 WP_063166241.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  UM396_RS06600 (UM396_06600) ymfI 1256779..1257495 (+) 717 WP_063166240.1 elongation factor P 5-aminopentanone reductase -
  UM396_RS06605 (UM396_06605) - 1257559..1257807 (+) 249 WP_063166239.1 DUF3243 domain-containing protein -
  UM396_RS06610 (UM396_06610) - 1257935..1258726 (+) 792 WP_063166238.1 DUF3388 domain-containing protein -
  UM396_RS06615 (UM396_06615) - 1258751..1259635 (+) 885 WP_322311091.1 RodZ domain-containing protein -
  UM396_RS06620 (UM396_06620) pgsA 1259714..1260292 (+) 579 WP_063166236.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  UM396_RS06625 (UM396_06625) cinA 1260319..1261563 (+) 1245 WP_063166235.1 competence/damage-inducible protein A Machinery gene
  UM396_RS06630 (UM396_06630) - 1261744..1262037 (+) 294 Protein_1250 DNA recombination/repair protein RecA -
  UM396_RS06635 (UM396_06635) ltrA 1262873..1264690 (+) 1818 WP_322311092.1 group II intron reverse transcriptase/maturase -
  UM396_RS06640 (UM396_06640) recA 1264761..1265576 (+) 816 WP_225995659.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44469.90 Da        Isoelectric Point: 5.5325

>NTDB_id=910718 UM396_RS06625 WP_063166235.1 1260319..1261563(+) (cinA) [Geobacillus subterraneus strain OXR-76]
MNAEIIAVGSELLLGQIANTNAQFLSQQLAELGINVYFHTAVGDNAARLEQAVNVAQTRADLILFTGGLGPTKDDLTKET
IARLLGRRLVTDEEALRAIEAYFVRTNRPMTENNKKQALVLEGSAVLKNEHGMAPGMALSVNGITYMLLPGPPKEMRPMF
TKYGRAFLRSAFSLSERIESRVLRFFGIGESALETALADLIDAQSNPTIAPLAGDGEVTLRLTAKHRDGAEAKRLLDETE
AAILMRVGRYCYGYNDETLFTKTIERLKERGWTVAAAESLTGGWFLEQLTAIAGASAVVQGGVVCYTNGVKEQVLGVPQP
LLETDGAVSEPCARLLAENVRAMCGADVGISFTGVAGPDPLEGHPPGTVYVGIAVRGRDTAVHRLTLSGTRDDIRVRTAK
YGCFFLLETLAAGG

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=910718 UM396_RS06625 WP_063166235.1 1260319..1261563(+) (cinA) [Geobacillus subterraneus strain OXR-76]
TTGAATGCGGAAATTATCGCTGTCGGCTCCGAGTTGCTGCTCGGACAAATTGCCAACACGAACGCCCAGTTTTTGTCGCA
GCAGCTCGCCGAACTTGGCATTAACGTCTATTTCCATACCGCCGTCGGCGACAATGCTGCCCGTCTTGAACAGGCGGTCA
ACGTAGCGCAGACGAGGGCGGACTTAATCCTTTTTACCGGCGGGCTCGGCCCGACAAAAGACGATTTGACGAAAGAGACG
ATCGCCCGCCTGCTCGGCCGCCGGCTCGTCACTGACGAGGAGGCGTTGCGGGCGATTGAAGCGTACTTTGTCCGCACGAA
CCGGCCAATGACAGAAAACAACAAAAAGCAGGCGCTCGTTTTGGAAGGATCGGCAGTGTTGAAAAACGAGCACGGCATGG
CGCCGGGGATGGCGCTTTCAGTCAATGGCATTACATACATGCTGCTGCCCGGGCCGCCGAAAGAAATGAGGCCGATGTTT
ACAAAATACGGGCGCGCGTTTTTGCGCAGTGCATTTTCGCTTTCAGAGCGCATCGAATCGCGCGTGCTTCGCTTTTTTGG
CATCGGTGAATCGGCGCTGGAAACAGCGCTCGCCGATTTGATTGACGCCCAGTCCAACCCGACGATCGCCCCGCTGGCCG
GCGATGGGGAAGTGACGCTCCGCCTGACGGCGAAGCACCGGGACGGGGCGGAAGCGAAACGGTTGCTTGATGAAACGGAA
GCGGCCATTTTGATGCGCGTCGGCCGCTATTGTTACGGATATAACGACGAAACGTTGTTTACGAAAACGATCGAACGGTT
AAAAGAAAGAGGATGGACGGTCGCTGCAGCTGAGAGTCTGACCGGCGGGTGGTTTCTCGAACAGCTGACAGCCATCGCGG
GCGCGTCGGCTGTCGTGCAAGGCGGCGTCGTCTGCTACACAAACGGCGTGAAAGAACAGGTGCTTGGTGTACCGCAGCCG
CTGCTTGAGACGGACGGGGCGGTGAGCGAACCGTGCGCCCGCTTGCTTGCCGAAAACGTCCGTGCGATGTGCGGCGCTGA
TGTTGGCATCAGCTTTACCGGCGTCGCCGGCCCCGACCCGCTTGAGGGCCACCCGCCCGGCACCGTTTATGTCGGCATCG
CCGTCCGCGGGCGTGACACAGCCGTCCACCGCCTCACCTTATCCGGCACGCGCGATGACATTCGCGTCCGCACCGCCAAA
TACGGTTGCTTCTTTTTGTTAGAGACGCTCGCGGCCGGCGGCTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.391

98.792

0.597
  cinA Streptococcus mitis SK321

48.395

97.826

0.473
  cinA Streptococcus pneumoniae TIGR4

48.395

97.826

0.473
  cinA Streptococcus mitis NCTC 12261

48.148

97.826

0.471
  cinA Streptococcus pneumoniae Rx1

48.148

97.826

0.471
  cinA Streptococcus pneumoniae R6

48.148

97.826

0.471
  cinA Streptococcus pneumoniae D39

47.901

97.826

0.469
  cinA Streptococcus mutans UA159

47.619

96.377

0.459
  cinA Streptococcus suis isolate S10

42.328

91.304

0.386