Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SM123_RS01225 Genome accession   NZ_CP139419
Coordinates   226804..227949 (+) Length   381 a.a.
NCBI ID   WP_003002082.1    Uniprot ID   -
Organism   Streptococcus lingualis strain S5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 221804..232949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS01205 (SM123_01205) ruvA 222779..223372 (+) 594 WP_070661626.1 Holliday junction branch migration protein RuvA -
  SM123_RS01210 (SM123_01210) - 223382..223945 (+) 564 WP_070594639.1 DNA-3-methyladenine glycosylase I -
  SM123_RS01215 (SM123_01215) - 224008..225039 (-) 1032 WP_320909633.1 S66 peptidase family protein -
  SM123_RS01220 (SM123_01220) cinA 225415..226683 (+) 1269 WP_320909634.1 competence/damage-inducible protein A Machinery gene
  SM123_RS01225 (SM123_01225) recA 226804..227949 (+) 1146 WP_003002082.1 recombinase RecA Machinery gene
  SM123_RS01230 (SM123_01230) spx 228037..228435 (+) 399 WP_003009108.1 transcriptional regulator Spx -
  SM123_RS01235 (SM123_01235) - 228572..229168 (+) 597 WP_201087716.1 SP0191 family lipoprotein -
  SM123_RS01240 (SM123_01240) - 229293..229559 (+) 267 WP_003002070.1 IreB family regulatory phosphoprotein -
  SM123_RS01245 (SM123_01245) ruvX 229559..229978 (+) 420 WP_023919889.1 Holliday junction resolvase RuvX -
  SM123_RS01250 (SM123_01250) - 230001..230306 (+) 306 WP_003001941.1 DUF1292 domain-containing protein -
  SM123_RS01255 (SM123_01255) - 230565..231797 (+) 1233 WP_320909635.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  SM123_RS01260 (SM123_01260) - 231874..232284 (+) 411 WP_320909636.1 SP_0198 family lipoprotein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 41043.76 Da        Isoelectric Point: 4.8456

>NTDB_id=909518 SM123_RS01225 WP_003002082.1 226804..227949(+) (recA) [Streptococcus lingualis strain S5]
MAKKQKKLDDISKKFGDEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELVKIATDLDIIQKAGAWYSYNGEKIGQGSE
NAKKFLADHPEIFDEIDHKVRVHFGLIEEDEAVKTLDKTEEAAPVVEEVTLDLDDAIEIED

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=909518 SM123_RS01225 WP_003002082.1 226804..227949(+) (recA) [Streptococcus lingualis strain S5]
ATGGCGAAAAAACAGAAAAAATTAGATGACATCTCTAAGAAATTTGGAGATGAGCGTGAAAAAGCGCTCAATGATGCCCT
GAAGTTGATCGAAAAGGATTTTGGTAAGGGATCAATCATGCGTTTAGGCGAACGTGCAGAGCAAAAAGTTCAAGTCATGA
GCTCTGGTTCCTTGGCGCTTGATATTGCCTTGGGTGCTGGTGGTTATCCAAAAGGTCGGATCATCGAAATCTATGGTCCA
GAATCATCTGGTAAAACAACCGTTGCCCTCCATGCAGTAGCCCAAGCACAGAAAGAAGGGGGCATTGCTGCCTTTATCGA
TGCCGAGCATGCCTTGGATCCATCTTATGCAGCAGCTCTTGGGGTCAATATCGACGAACTTCTCTTGTCTCAACCAGACT
CAGGGGAACAAGGACTTGAAATTGCTGGTAAATTGATCGACTCTGGTGCGGTTGATTTGGTGGTTGTCGACTCTGTTGCG
GCCTTGGTACCACGTGCGGAAATCGATGGAGATATCGGGGATAGCCACGTTGGTTTGCAAGCGCGGATGATGAGCCAAGC
GATGCGTAAACTCGGAGCTTCGATCAATAAGACCAAGACCATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGGG
TCATGTTTGGGAACCCTGAAACCACACCTGGTGGTCGTGCCCTGAAATTCTACGCTTCTGTCCGTCTAGATGTTCGTGGA
AATACTCAAATCAAGGGGACTGGGGACCAAAAAGATACCAACGTTGGTAAGGAAACCAAGATCAAGGTTGTGAAGAACAA
GGTAGCTCCACCGTTCAAAGAAGCCATGGTCGAAATCATGTACGGGGAAGGAATTTCACGTACAGGTGAATTGGTGAAGA
TTGCAACAGATTTGGATATCATCCAAAAAGCGGGTGCGTGGTACTCCTATAATGGCGAAAAAATTGGTCAAGGATCTGAA
AATGCTAAGAAATTCTTGGCTGACCACCCAGAAATTTTTGACGAAATCGACCACAAGGTTCGGGTTCATTTTGGTTTGAT
CGAAGAAGACGAAGCAGTGAAAACCCTTGATAAAACTGAAGAAGCAGCTCCTGTCGTAGAAGAAGTAACTCTAGATTTAG
ATGATGCGATTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

90.601

100

0.911
  recA Streptococcus pneumoniae Rx1

88.889

100

0.903
  recA Streptococcus pneumoniae D39

88.889

100

0.903
  recA Streptococcus pneumoniae R6

88.889

100

0.903
  recA Streptococcus pneumoniae TIGR4

88.889

100

0.903
  recA Streptococcus mitis SK321

90.026

100

0.9
  recA Streptococcus mutans UA159

86.684

100

0.871
  recA Streptococcus pyogenes NZ131

87.139

100

0.871
  recA Lactococcus lactis subsp. cremoris KW2

78.286

91.864

0.719
  recA Latilactobacillus sakei subsp. sakei 23K

67.697

93.438

0.633
  recA Bacillus subtilis subsp. subtilis str. 168

69.301

86.352

0.598
  recA Vibrio cholerae strain A1552

59.829

92.126

0.551
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.829

92.126

0.551
  recA Glaesserella parasuis strain SC1401

60.882

89.239

0.543
  recA Acinetobacter baylyi ADP1

58.974

92.126

0.543
  recA Acinetobacter baumannii D1279779

59.884

90.289

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.777

84.777

0.541
  recA Neisseria gonorrhoeae MS11

61.934

86.877

0.538
  recA Neisseria gonorrhoeae strain FA1090

61.934

86.877

0.538
  recA Neisseria gonorrhoeae MS11

61.934

86.877

0.538
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.702

86.352

0.533
  recA Ralstonia pseudosolanacearum GMI1000

61.199

83.202

0.509
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.877

0.509
  recA Helicobacter pylori strain NCTC11637

57.186

87.664

0.501
  recA Helicobacter pylori 26695

57.186

87.664

0.501
  recA Pseudomonas stutzeri DSM 10701

57.927

86.089

0.499