Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SM121_RS02590 Genome accession   NZ_CP139418
Coordinates   501122..502267 (+) Length   381 a.a.
NCBI ID   WP_003002082.1    Uniprot ID   -
Organism   Streptococcus dentalis strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 496122..507267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS02570 (SM121_02570) mutL 496514..498457 (+) 1944 WP_320911085.1 DNA mismatch repair endonuclease MutL -
  SM121_RS02575 (SM121_02575) ruvA 498478..499071 (+) 594 WP_003002260.1 Holliday junction branch migration protein RuvA -
  SM121_RS02580 (SM121_02580) - 499081..499635 (+) 555 WP_320911086.1 DNA-3-methyladenine glycosylase I -
  SM121_RS02585 (SM121_02585) cinA 499733..501001 (+) 1269 WP_320911087.1 competence/damage-inducible protein A Machinery gene
  SM121_RS02590 (SM121_02590) recA 501122..502267 (+) 1146 WP_003002082.1 recombinase RecA Machinery gene
  SM121_RS02595 (SM121_02595) spx 502355..502753 (+) 399 WP_003002116.1 transcriptional regulator Spx -
  SM121_RS02600 (SM121_02600) - 502889..503485 (+) 597 WP_320911088.1 SP0191 family lipoprotein -
  SM121_RS02605 (SM121_02605) - 503610..503876 (+) 267 WP_003002070.1 IreB family regulatory phosphoprotein -
  SM121_RS02610 (SM121_02610) ruvX 503876..504295 (+) 420 WP_003002199.1 Holliday junction resolvase RuvX -
  SM121_RS02615 (SM121_02615) - 504318..504623 (+) 306 WP_320911089.1 DUF1292 domain-containing protein -
  SM121_RS02620 (SM121_02620) - 504781..506013 (+) 1233 WP_320911090.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  SM121_RS02625 (SM121_02625) - 506090..506500 (+) 411 WP_003012851.1 SP_0198 family lipoprotein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 41043.76 Da        Isoelectric Point: 4.8456

>NTDB_id=909480 SM121_RS02590 WP_003002082.1 501122..502267(+) (recA) [Streptococcus dentalis strain S1]
MAKKQKKLDDISKKFGDEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELVKIATDLDIIQKAGAWYSYNGEKIGQGSE
NAKKFLADHPEIFDEIDHKVRVHFGLIEEDEAVKTLDKTEEAAPVVEEVTLDLDDAIEIED

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=909480 SM121_RS02590 WP_003002082.1 501122..502267(+) (recA) [Streptococcus dentalis strain S1]
ATGGCGAAAAAACAGAAAAAATTAGATGATATCTCTAAAAAATTTGGAGATGAGCGTGAAAAAGCGCTCAATGATGCCCT
GAAGTTGATCGAAAAGGATTTTGGTAAGGGATCGATCATGCGTTTGGGCGAACGTGCAGAGCAAAAGGTACAAGTCATGA
GCTCTGGTTCCTTGGCGCTTGATATTGCCTTGGGTGCTGGTGGTTATCCAAAAGGTCGGATCATCGAAATCTATGGTCCA
GAATCATCTGGTAAAACAACCGTTGCCCTCCATGCAGTAGCCCAAGCACAGAAAGAAGGGGGCATTGCTGCCTTTATCGA
TGCCGAGCATGCCTTGGATCCATCTTATGCAGCAGCTCTTGGGGTCAATATCGACGAACTTCTCTTGTCTCAACCAGACT
CAGGGGAACAAGGACTTGAAATTGCTGGTAAATTGATCGACTCTGGTGCGGTTGATTTGGTGGTTGTCGACTCTGTTGCG
GCCTTGGTCCCACGTGCGGAAATCGATGGAGATATCGGAGATAGCCACGTTGGTTTGCAAGCGCGGATGATGAGCCAAGC
TATGCGTAAACTCGGAGCTTCTATCAATAAGACGAAGACCATTGCCATCTTTATCAACCAATTACGTGAAAAAGTTGGGG
TCATGTTTGGGAACCCTGAAACCACACCTGGTGGTCGTGCCCTTAAATTCTATGCTTCTGTCCGTCTAGATGTTCGTGGA
AATACTCAAATCAAGGGGACTGGGGACCAAAAAGATACCAACGTTGGTAAGGAAACTAAGATCAAGGTTGTGAAGAACAA
GGTGGCTCCACCGTTCAAAGAAGCTATGGTTGAAATTATGTACGGGGAAGGAATTTCACGTACAGGTGAGTTGGTGAAGA
TTGCAACAGATTTGGATATCATCCAAAAAGCGGGTGCGTGGTACTCCTATAACGGCGAAAAAATTGGTCAAGGATCTGAA
AATGCTAAGAAATTCTTGGCTGACCACCCAGAAATTTTTGACGAAATCGACCACAAGGTTCGGGTTCATTTTGGTTTGAT
CGAAGAAGACGAAGCAGTGAAAACCCTTGATAAAACTGAAGAAGCAGCTCCTGTCGTAGAAGAAGTAACTCTAGATTTAG
ATGACGCGATTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

90.601

100

0.911
  recA Streptococcus pneumoniae Rx1

88.889

100

0.903
  recA Streptococcus pneumoniae D39

88.889

100

0.903
  recA Streptococcus pneumoniae R6

88.889

100

0.903
  recA Streptococcus pneumoniae TIGR4

88.889

100

0.903
  recA Streptococcus mitis SK321

90.026

100

0.9
  recA Streptococcus mutans UA159

86.684

100

0.871
  recA Streptococcus pyogenes NZ131

87.139

100

0.871
  recA Lactococcus lactis subsp. cremoris KW2

78.286

91.864

0.719
  recA Latilactobacillus sakei subsp. sakei 23K

67.697

93.438

0.633
  recA Bacillus subtilis subsp. subtilis str. 168

69.301

86.352

0.598
  recA Vibrio cholerae strain A1552

59.829

92.126

0.551
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.829

92.126

0.551
  recA Glaesserella parasuis strain SC1401

60.882

89.239

0.543
  recA Acinetobacter baylyi ADP1

58.974

92.126

0.543
  recA Acinetobacter baumannii D1279779

59.884

90.289

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.777

84.777

0.541
  recA Neisseria gonorrhoeae MS11

61.934

86.877

0.538
  recA Neisseria gonorrhoeae strain FA1090

61.934

86.877

0.538
  recA Neisseria gonorrhoeae MS11

61.934

86.877

0.538
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.702

86.352

0.533
  recA Ralstonia pseudosolanacearum GMI1000

61.199

83.202

0.509
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.877

0.509
  recA Helicobacter pylori strain NCTC11637

57.186

87.664

0.501
  recA Helicobacter pylori 26695

57.186

87.664

0.501
  recA Pseudomonas stutzeri DSM 10701

57.927

86.089

0.499