Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SM121_RS02585 Genome accession   NZ_CP139418
Coordinates   499733..501001 (+) Length   422 a.a.
NCBI ID   WP_320911087.1    Uniprot ID   -
Organism   Streptococcus dentalis strain S1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 494733..506001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS02560 (SM121_02560) - 495376..495831 (-) 456 WP_003012810.1 DUF3021 domain-containing protein -
  SM121_RS02565 (SM121_02565) - 495825..496265 (-) 441 WP_003012880.1 LytTR family DNA-binding domain-containing protein -
  SM121_RS02570 (SM121_02570) mutL 496514..498457 (+) 1944 WP_320911085.1 DNA mismatch repair endonuclease MutL -
  SM121_RS02575 (SM121_02575) ruvA 498478..499071 (+) 594 WP_003002260.1 Holliday junction branch migration protein RuvA -
  SM121_RS02580 (SM121_02580) - 499081..499635 (+) 555 WP_320911086.1 DNA-3-methyladenine glycosylase I -
  SM121_RS02585 (SM121_02585) cinA 499733..501001 (+) 1269 WP_320911087.1 competence/damage-inducible protein A Machinery gene
  SM121_RS02590 (SM121_02590) recA 501122..502267 (+) 1146 WP_003002082.1 recombinase RecA Machinery gene
  SM121_RS02595 (SM121_02595) spx 502355..502753 (+) 399 WP_003002116.1 transcriptional regulator Spx -
  SM121_RS02600 (SM121_02600) - 502889..503485 (+) 597 WP_320911088.1 SP0191 family lipoprotein -
  SM121_RS02605 (SM121_02605) - 503610..503876 (+) 267 WP_003002070.1 IreB family regulatory phosphoprotein -
  SM121_RS02610 (SM121_02610) ruvX 503876..504295 (+) 420 WP_003002199.1 Holliday junction resolvase RuvX -
  SM121_RS02615 (SM121_02615) - 504318..504623 (+) 306 WP_320911089.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45043.24 Da        Isoelectric Point: 4.8631

>NTDB_id=909479 SM121_RS02585 WP_320911087.1 499733..501001(+) (cinA) [Streptococcus dentalis strain S1]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLASLGIDVYYHVAVGDNEGRLFSTIETASKRSDLVILCGGLGPTEDDLTKQT
LAKFLGKELVFDPTALAKLDTFFASRPDYVRTPNNERQAQLIAGSIPLQNRTGLAVGGLIEVNGVTYVVLPGPPSELKPM
VNEQLVPHLTTGEELFSRVLRFFGIGESQLVTILADIIEKQSDPTVAPYAKTGEVTLRLSTKAKDQASADAKLDVLEKEI
LSRHTLDHQPLQELFYGYGDDNSMAKVAFDLLKQAGKTITAAESLTAGLFQATLADFSGASSIFAGGFVTYSLEEKSKML
SIPAQELEQHGVVSHFTAQAMASQARKLTGSDYGVSLTGVAGPDSLEGHPAGTVFIGLATPNGVDSVQVNIAGRSRADVR
EIAVLHAFNLVRLAVLNGENLV

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=909479 SM121_RS02585 WP_320911087.1 499733..501001(+) (cinA) [Streptococcus dentalis strain S1]
ATGAAGGCGGAAATTATTGCAGTTGGAACAGAAATTCTAACAGGACAAATTGTGAACACCAATGCTCAATTCTTGTCTGA
AAAATTGGCTAGTTTAGGGATTGATGTCTATTATCATGTGGCGGTAGGAGACAATGAAGGTCGTCTCTTCTCGACCATTG
AGACGGCTTCAAAACGCAGTGATTTGGTGATTTTATGTGGTGGACTTGGGCCAACAGAGGATGATTTGACCAAGCAAACC
CTTGCTAAGTTTTTAGGGAAAGAACTGGTTTTTGATCCAACAGCGCTTGCCAAACTCGACACCTTCTTTGCCAGTCGCCC
TGATTATGTCCGGACGCCCAATAATGAGCGACAAGCACAATTGATTGCCGGTTCAATCCCCCTTCAAAACCGTACAGGTC
TCGCGGTTGGAGGTTTGATTGAAGTCAATGGTGTGACCTATGTCGTTCTACCTGGTCCACCAAGTGAGTTAAAACCCATG
GTCAATGAACAATTGGTGCCTCATTTGACAACAGGGGAAGAGCTTTTTTCAAGAGTCTTGCGCTTCTTTGGGATTGGGGA
AAGCCAGCTGGTTACGATCCTAGCAGATATCATTGAAAAGCAGAGTGATCCGACGGTTGCCCCTTATGCCAAGACGGGAG
AAGTAACCTTGCGTCTATCTACAAAGGCGAAGGATCAAGCTTCAGCGGATGCTAAGCTCGATGTCTTAGAAAAGGAAATC
TTATCCCGTCATACTCTGGATCATCAACCCTTGCAAGAGTTGTTTTACGGTTATGGGGATGACAATTCGATGGCCAAGGT
GGCCTTTGATCTTTTGAAACAGGCTGGTAAGACCATTACAGCTGCAGAAAGCCTGACGGCCGGCCTTTTCCAAGCGACTT
TGGCAGATTTTTCAGGTGCGTCCAGCATCTTCGCGGGTGGTTTTGTCACCTATAGTTTGGAAGAAAAAAGCAAGATGTTG
TCTATTCCAGCTCAAGAGTTAGAGCAACATGGAGTGGTGTCTCATTTTACAGCTCAAGCCATGGCTTCACAGGCCCGTAA
GTTAACAGGATCCGATTATGGTGTTAGCCTGACCGGAGTTGCGGGGCCAGATAGTCTAGAAGGGCACCCAGCAGGGACTG
TCTTTATCGGACTTGCGACTCCGAATGGAGTGGATAGTGTCCAAGTTAATATCGCTGGACGTAGCCGGGCGGATGTCCGC
GAAATTGCAGTCCTTCATGCCTTTAATTTGGTGCGCTTGGCTGTATTAAATGGTGAAAATTTGGTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

74.58

98.815

0.737
  cinA Streptococcus mitis NCTC 12261

74.58

98.815

0.737
  cinA Streptococcus pneumoniae TIGR4

73.381

98.815

0.725
  cinA Streptococcus pneumoniae Rx1

73.381

98.815

0.725
  cinA Streptococcus pneumoniae R6

73.381

98.815

0.725
  cinA Streptococcus pneumoniae D39

73.141

98.815

0.723
  cinA Streptococcus mutans UA159

70.213

100

0.704
  cinA Streptococcus suis isolate S10

55.448

97.867

0.543
  cinA Bacillus subtilis subsp. subtilis str. 168

47.47

98.341

0.467