Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R4Z10_RS13320 Genome accession   NZ_CP137636
Coordinates   2622544..2623593 (-) Length   349 a.a.
NCBI ID   WP_338469785.1    Uniprot ID   -
Organism   Niallia sp. XMNu-256     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2617544..2628593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4Z10_RS13305 (R4Z10_13300) spoVS 2619217..2619477 (-) 261 WP_071395267.1 stage V sporulation protein SpoVS -
  R4Z10_RS13310 (R4Z10_13305) - 2619880..2620677 (-) 798 WP_338469783.1 TIGR00282 family metallophosphoesterase -
  R4Z10_RS13315 (R4Z10_13310) rny 2620752..2622314 (-) 1563 WP_338469784.1 ribonuclease Y -
  R4Z10_RS13320 (R4Z10_13315) recA 2622544..2623593 (-) 1050 WP_338469785.1 recombinase RecA Machinery gene
  R4Z10_RS13325 (R4Z10_13320) cinA 2623874..2625109 (-) 1236 WP_338469786.1 competence/damage-inducible protein A Machinery gene
  R4Z10_RS13330 (R4Z10_13325) pgsA 2625141..2625719 (-) 579 WP_338469787.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R4Z10_RS13335 (R4Z10_13330) - 2625816..2626736 (-) 921 WP_338469788.1 RodZ domain-containing protein -
  R4Z10_RS13340 (R4Z10_13335) - 2626757..2627548 (-) 792 WP_338469789.1 DUF3388 domain-containing protein -
  R4Z10_RS13345 (R4Z10_13340) - 2627990..2628238 (-) 249 WP_338469790.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37918.90 Da        Isoelectric Point: 4.7712

>NTDB_id=899614 R4Z10_RS13320 WP_338469785.1 2622544..2623593(-) (recA) [Niallia sp. XMNu-256]
MSDRQVALEQALKQIEKQFGKGSIMKLGEQTDRRISTVPSGSLALDTALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQKKGGQAAFIDAEHALDPDYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGAINKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSTVRLEVRRAEAIKQGNDIVGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISQEGEIVDIGAELDIIEKSGSWYSYNGERVGQGRENAKQFLKENPDIRAEVQQQ
IRNYYGLDGVQVASPDKEEAEQDELNLVD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=899614 R4Z10_RS13320 WP_338469785.1 2622544..2623593(-) (recA) [Niallia sp. XMNu-256]
GTGAGTGATCGACAAGTAGCCCTTGAACAGGCATTAAAACAAATAGAAAAACAATTTGGTAAAGGCTCAATTATGAAGCT
GGGAGAGCAAACAGATCGCAGAATCTCAACCGTTCCTAGTGGCTCATTAGCCTTAGATACTGCACTTGGTGTAGGCGGAT
ATCCAAGAGGACGGATTATCGAAATCTATGGTCCTGAAAGTTCCGGTAAAACAACCGTTGCCCTTCATGCAATCGCAGAA
GTTCAGAAAAAAGGTGGACAAGCAGCGTTTATCGATGCCGAACATGCGCTCGATCCTGATTATGCACAAAAATTAGGAGT
AAATATTGATGAATTGCTTTTATCTCAGCCAGATACGGGTGAGCAGGCACTAGAAATTGCAGAAGCTCTTGTTCGAAGCG
GTGCGGTGGATATCGTTGTAGTTGACTCCGTTGCAGCTTTAGTACCTAAAGCAGAGATTGAAGGGGAAATGGGTGATTCC
CACATGGGATTACAAGCGCGCCTCATGTCACAAGCCCTTCGTAAGCTTTCAGGTGCAATTAATAAATCTAATACGATTGC
AATCTTTATTAACCAAGTCCGTGAGAAAATTGGAGTTATGTTCGGAAATCCGGAAACGACGCCGGGTGGACGTGCACTTA
AGTTCTACTCAACTGTTCGTTTAGAAGTGCGCCGCGCTGAAGCGATTAAACAAGGAAATGATATTGTTGGAAATCGAACT
AAGATTAAAATTGTCAAAAATAAAGTCGCGCCTCCATTCCGTACAGCTGAAGTAGATATTATGTATGGAGAAGGAATTTC
TCAAGAAGGAGAAATTGTCGATATTGGTGCCGAGCTTGATATAATTGAAAAAAGTGGCTCATGGTACTCATATAATGGAG
AACGTGTTGGTCAAGGAAGAGAGAACGCAAAGCAATTTCTTAAAGAAAATCCTGATATTCGTGCCGAAGTACAACAGCAA
ATCCGCAATTACTATGGATTAGATGGTGTTCAGGTCGCTTCTCCAGATAAAGAGGAAGCCGAACAAGATGAACTAAACTT
AGTTGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.805

93.983

0.825
  recA Latilactobacillus sakei subsp. sakei 23K

72.543

99.14

0.719
  recA Streptococcus pneumoniae R6

65.833

100

0.679
  recA Streptococcus pneumoniae Rx1

65.833

100

0.679
  recA Streptococcus pneumoniae D39

65.833

100

0.679
  recA Streptococcus pneumoniae TIGR4

65.833

100

0.679
  recA Streptococcus mitis NCTC 12261

67.236

100

0.676
  recA Streptococcus mitis SK321

66.952

100

0.673
  recA Streptococcus mutans UA159

65.634

100

0.668
  recA Streptococcus pyogenes NZ131

67.988

93.983

0.639
  recA Lactococcus lactis subsp. cremoris KW2

66.667

94.556

0.63
  recA Neisseria gonorrhoeae strain FA1090

64.955

94.842

0.616
  recA Neisseria gonorrhoeae MS11

64.955

94.842

0.616
  recA Neisseria gonorrhoeae MS11

64.955

94.842

0.616
  recA Ralstonia pseudosolanacearum GMI1000

64.742

94.269

0.61
  recA Acinetobacter baylyi ADP1

61.337

98.567

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.765

97.421

0.602
  recA Acinetobacter baumannii D1279779

61.224

98.281

0.602
  recA Vibrio cholerae strain A1552

65.312

91.691

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.312

91.691

0.599
  recA Glaesserella parasuis strain SC1401

65.312

91.691

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

93.41

0.596
  recA Helicobacter pylori strain NCTC11637

60.819

97.994

0.596
  recA Helicobacter pylori 26695

60.526

97.994

0.593
  recA Pseudomonas stutzeri DSM 10701

63.75

91.691

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.438

91.691

0.582