Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   R4Z10_RS13325 Genome accession   NZ_CP137636
Coordinates   2623874..2625109 (-) Length   411 a.a.
NCBI ID   WP_338469786.1    Uniprot ID   -
Organism   Niallia sp. XMNu-256     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2618874..2630109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4Z10_RS13305 (R4Z10_13300) spoVS 2619217..2619477 (-) 261 WP_071395267.1 stage V sporulation protein SpoVS -
  R4Z10_RS13310 (R4Z10_13305) - 2619880..2620677 (-) 798 WP_338469783.1 TIGR00282 family metallophosphoesterase -
  R4Z10_RS13315 (R4Z10_13310) rny 2620752..2622314 (-) 1563 WP_338469784.1 ribonuclease Y -
  R4Z10_RS13320 (R4Z10_13315) recA 2622544..2623593 (-) 1050 WP_338469785.1 recombinase RecA Machinery gene
  R4Z10_RS13325 (R4Z10_13320) cinA 2623874..2625109 (-) 1236 WP_338469786.1 competence/damage-inducible protein A Machinery gene
  R4Z10_RS13330 (R4Z10_13325) pgsA 2625141..2625719 (-) 579 WP_338469787.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R4Z10_RS13335 (R4Z10_13330) - 2625816..2626736 (-) 921 WP_338469788.1 RodZ domain-containing protein -
  R4Z10_RS13340 (R4Z10_13335) - 2626757..2627548 (-) 792 WP_338469789.1 DUF3388 domain-containing protein -
  R4Z10_RS13345 (R4Z10_13340) - 2627990..2628238 (-) 249 WP_338469790.1 DUF3243 domain-containing protein -
  R4Z10_RS13350 (R4Z10_13345) - 2628342..2629064 (-) 723 WP_338469791.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45268.86 Da        Isoelectric Point: 5.3362

>NTDB_id=899615 R4Z10_RS13325 WP_338469786.1 2623874..2625109(-) (cinA) [Niallia sp. XMNu-256]
MNAEIIAVGSELLLGQIANTNARFLSKNLADLGVNVFYHTVVGDNPARLKQVIEIAERRSNLLIFTGGLGPTKDDLTKET
ISDHLNRKLVMDQKALETIAEHYNRTGRIMTENNKKQALVFEGSEILPNDHGMAPGIAYSTETHTYMLFPGVPSEMEPMF
LTYAQPYLIEKLQLKERIVSRVLRFFGIGESQLETEIEDLIDGQTNPTIAPLAGNNEVTLRITAKHQSDTEAIEMIERTE
RLILDRVGDYFYGYNETSLMSELSKVLQENQLTIAAAESLTGGMFQKELTATPGAGMLLKGGIVCYTPEVKQNVVKVKKE
TIDSHGVVSSQCAQELAENVANIMNADIGISFTGVAGPDELEGKPVGTVYVGISIKGKPTIVEKLALSGNRTNIRIRTVK
WGCHYLLKNIN

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=899615 R4Z10_RS13325 WP_338469786.1 2623874..2625109(-) (cinA) [Niallia sp. XMNu-256]
TTGAACGCAGAAATCATTGCTGTTGGTTCTGAATTATTGTTAGGGCAAATTGCCAATACAAATGCTCGTTTTTTATCTAA
AAACTTAGCTGACTTAGGAGTTAATGTTTTTTATCATACAGTTGTTGGTGATAATCCAGCTCGTTTAAAGCAAGTAATTG
AAATAGCCGAAAGACGTTCGAATTTGCTCATTTTCACGGGAGGACTGGGACCGACAAAGGATGATTTAACAAAAGAAACC
ATTTCGGACCATTTAAATCGGAAGCTTGTGATGGATCAAAAAGCTTTAGAAACGATAGCTGAGCACTATAATCGTACAGG
TCGAATAATGACAGAGAATAATAAAAAGCAGGCATTGGTGTTTGAAGGCTCAGAAATTCTACCGAATGATCACGGAATGG
CACCAGGGATCGCATATTCAACAGAAACCCATACATATATGCTCTTCCCAGGTGTGCCATCAGAAATGGAACCAATGTTT
TTAACATATGCTCAACCGTATTTGATAGAGAAGCTACAATTAAAAGAAAGAATTGTTTCAAGAGTGTTACGATTCTTTGG
AATCGGGGAATCTCAGTTAGAGACAGAGATTGAAGATTTAATCGATGGACAAACAAACCCTACCATTGCGCCACTAGCTG
GAAATAATGAAGTAACATTAAGAATTACAGCTAAGCATCAATCTGATACAGAAGCAATTGAAATGATTGAAAGGACAGAA
CGACTTATTTTAGACCGTGTAGGGGATTACTTTTACGGTTATAATGAAACATCGTTAATGAGTGAACTTTCTAAAGTCTT
GCAGGAAAACCAATTAACGATCGCAGCAGCTGAAAGTTTAACAGGGGGAATGTTCCAAAAAGAATTAACAGCGACTCCAG
GTGCTGGAATGCTATTAAAAGGCGGGATTGTCTGTTATACACCTGAAGTCAAACAAAATGTAGTAAAGGTAAAAAAAGAA
ACGATTGACTCTCATGGCGTTGTGAGTAGTCAATGCGCACAAGAATTGGCAGAAAACGTGGCAAATATAATGAATGCAGA
CATTGGCATTAGCTTTACAGGTGTTGCAGGGCCTGATGAATTGGAAGGAAAACCCGTTGGAACGGTCTATGTTGGAATTA
GCATAAAAGGAAAACCAACAATAGTTGAGAAGTTAGCGTTAAGTGGTAATCGTACAAACATTCGTATTCGTACAGTTAAA
TGGGGATGCCACTATTTATTAAAAAATATTAACTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.099

98.783

0.594
  cinA Streptococcus pneumoniae TIGR4

46.42

98.54

0.457
  cinA Streptococcus mitis SK321

46.173

98.54

0.455
  cinA Streptococcus pneumoniae Rx1

45.926

98.54

0.453
  cinA Streptococcus pneumoniae R6

45.926

98.54

0.453
  cinA Streptococcus mitis NCTC 12261

45.926

98.54

0.453
  cinA Streptococcus pneumoniae D39

45.679

98.54

0.45
  cinA Streptococcus mutans UA159

45.5

97.324

0.443
  cinA Streptococcus suis isolate S10

40.741

91.971

0.375