Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AAHT64_RS16650 Genome accession   NZ_CP155054
Coordinates   3223485..3224615 (-) Length   376 a.a.
NCBI ID   WP_032677448.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain R38     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3218485..3229615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT64_RS16605 (AAHT64_16605) cotJC 3218580..3219149 (-) 570 WP_003233850.1 spore coat protein CotJC -
  AAHT64_RS16610 (AAHT64_16610) cotJB 3219164..3219427 (-) 264 WP_003219491.1 spore coat protein CotJB -
  AAHT64_RS16615 (AAHT64_16615) cotJA 3219411..3219659 (-) 249 WP_003219489.1 spore coat-associated protein CotJA -
  AAHT64_RS16620 (AAHT64_16620) yesF 3219786..3220654 (-) 869 Protein_3269 NAD-dependent epimerase/dehydratase family protein -
  AAHT64_RS16625 (AAHT64_16625) yesE 3220651..3221094 (-) 444 WP_019712804.1 nuclear transport factor 2 family protein -
  AAHT64_RS16630 (AAHT64_16630) yezE 3221173..3221757 (-) 585 WP_003243181.1 TetR/AcrR family transcriptional regulator -
  AAHT64_RS16635 (AAHT64_16635) yeeK 3221872..3222309 (-) 438 WP_019712803.1 spore coat protein YeeK -
  AAHT64_RS16640 (AAHT64_16640) yeeI 3222443..3223162 (-) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AAHT64_RS16645 (AAHT64_16645) phrH 3223322..3223495 (-) 174 WP_029317430.1 phosphatase RapH inhibitor PhrH -
  AAHT64_RS16650 (AAHT64_16650) rapC 3223485..3224615 (-) 1131 WP_032677448.1 response regulator aspartate phosphatase RapH Regulator
  AAHT64_RS16655 (AAHT64_16655) - 3224761..3225921 (-) 1161 WP_003233867.1 lysozyme inhibitor LprI family protein -
  AAHT64_RS16660 (AAHT64_16660) - 3226124..3226561 (-) 438 WP_015252628.1 hypothetical protein -
  AAHT64_RS16665 (AAHT64_16665) - 3226776..3227782 (-) 1007 Protein_3278 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43990.33 Da        Isoelectric Point: 5.9921

>NTDB_id=895578 AAHT64_RS16650 WP_032677448.1 3223485..3224615(-) (rapC) [Bacillus subtilis subsp. subtilis strain R38]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVKQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=895578 AAHT64_RS16650 WP_032677448.1 3223485..3224615(-) (rapC) [Bacillus subtilis subsp. subtilis strain R38]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTGAAGCAGGACATTCAGCAAATGGAAGAAGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGTCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGACGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.318

100

0.404