Detailed information NTG0089049

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: Pcarn_RS11405
• Genome accession: NZ_AP024881
• Coordinates: 2497059..2498084 (-)
• Length: 341 a.a.
• NCBI ID: WP_261833987.1
• Uniprot ID: A0A0B8PFE2
• Organism: Vibrio ishigakensis strain C1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2492059..2503084

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Pcarn_RS11385	csrA	2492177..2492374 (-)	198	WP_004415691.1	carbon storage regulator CsrA	-
Pcarn_RS11390	-	2492452..2493624 (-)	1173	WP_261833984.1	aspartate kinase	-
Pcarn_RS11395	alaS	2493771..2496362 (-)	2592	WP_261833985.1	alanine--tRNA ligase	-
Pcarn_RS11400	recX	2496528..2496995 (-)	468	WP_261833986.1	recombination regulator RecX	-
Pcarn_RS11405	recA	2497059..2498084 (-)	1026	WP_261833987.1	recombinase RecA	Machinery gene
Pcarn_RS11410	-	2498191..2498685 (-)	495	WP_261833988.1	CinA family protein	-
Pcarn_RS11415	mutS	2498759..2501332 (+)	2574	WP_261833989.1	DNA mismatch repair protein MutS	-
Pcarn_RS11420	rpoS	2501377..2502354 (-)	978	WP_261833990.1	RNA polymerase sigma factor RpoS	Regulator

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 36709.11 Da
• Isoelectric Point: 5.0433

>NTDB_id=89049 Pcarn_RS11405 WP_261833987.1 2497059..2498084(-) (recA) [Vibrio ishigakensis strain C1]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNKAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFVDAEHALDPVYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKQAETQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANACKFLRENPEAAQAIDA
KLRQMLLTTAQLEESSEIEVE

Nucleotide

• Length: 1026 bp

>NTDB_id=89049 Pcarn_RS11405 WP_261833987.1 2497059..2498084(-) (recA) [Vibrio ishigakensis strain C1]
ATGGACGAAAATAAACAAAAAGCACTGGCCGCGGCGCTAGGTCAAATTGAAAAGCAGTTCGGTAAAGGCTCTATCATGCG
CCTTGGTGACAACAAAGCAATGGACGTTGAAACCATTTCTACTGGCTCACTCTCTCTTGATATCGCTCTTGGTGCTGGTG
GTTTGCCAATGGGGCGTATCGTTGAAATTTTCGGTCCTGAATCTTCGGGTAAAACTACTCTAACTCTAGAGCTTATTGCA
GCTGCACAACGTGAAGGTAAAACCTGTGCATTTGTTGATGCTGAGCACGCTCTAGACCCTGTATACGCTCAAAAGCTTGG
CGTAGATATCGACCAACTTCTTGTTTCTCAGCCAGATACGGGTGAGCAAGCTCTCGAAATCTGTGATGCACTGGCTCGTT
CTGGCGCAGTAGACGTTCTGGTTGTTGACTCAGTAGCTGCTCTAACTCCAAAAGCAGAAATTGAAGGCGAGATGGGCGAC
AGCCACATGGGTCTTCAAGCTCGTATGCTTTCTCAAGCTATGCGTAAGCTGACGGGTAACCTTAAGCAATCTAACTGTAT
GTGTATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTTGGTAACCCAGAGACTACCACTGGTGGTAACGCAC
TTAAGTTCTATGCTTCAGTTCGTCTAGATATCCGTCGTACTGGCGCTATCAAAGAGGGTGACGAAGTAGTAGGTAACGAA
ACTCGTATTAAGGTAGTTAAGAACAAGATTGCAGCTCCATTTAAGCAAGCGGAAACACAGATCATGTACGGCCAAGGCTT
TAACCGTGAGGGCGAGTTAATCGACCTAGGTGTTAAACACAAGCTAGTAGAAAAAGCGGGTGCTTGGTACAGCTACAATG
GTGACAAGATCGGTCAGGGTAAAGCGAACGCGTGTAAGTTCCTGCGTGAGAACCCAGAAGCGGCACAAGCTATCGATGCT
AAGCTTCGTCAGATGCTACTGACTACCGCTCAGCTAGAAGAGTCTTCAGAAATCGAAGTTGAATAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

3D structure

• AlphaFold DB: A0A0B8PFE2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae O1 biovar El Tor strain E7946	92.492	97.654	0.903
recA	Vibrio cholerae strain A1552	92.492	97.654	0.903
recA	Pseudomonas stutzeri DSM 10701	76.061	96.774	0.736
recA	Acinetobacter baumannii D1279779	71.345	100	0.716
recA	Acinetobacter baylyi ADP1	71.261	100	0.713
recA	Neisseria gonorrhoeae MS11	67.251	100	0.674
recA	Neisseria gonorrhoeae MS11	67.251	100	0.674
recA	Neisseria gonorrhoeae strain FA1090	67.251	100	0.674
recA	Glaesserella parasuis strain SC1401	70.679	95.015	0.672
recA	Ralstonia pseudosolanacearum GMI1000	70.701	92.082	0.651
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.95	93.548	0.598
recA	Bacillus subtilis subsp. subtilis str. 168	62.928	94.135	0.592
recA	Streptococcus pneumoniae Rx1	61.61	94.721	0.584
recA	Streptococcus pneumoniae TIGR4	61.61	94.721	0.584
recA	Streptococcus pneumoniae R6	61.61	94.721	0.584
recA	Streptococcus pneumoniae D39	61.61	94.721	0.584
recA	Streptococcus mutans UA159	60.923	95.308	0.581
recA	Streptococcus mitis NCTC 12261	61.3	94.721	0.581
recA	Streptococcus mitis SK321	61.3	94.721	0.581
recA	Helicobacter pylori strain NCTC11637	60.55	95.894	0.581
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	59.517	97.067	0.578
recA	Helicobacter pylori 26695	60.245	95.894	0.578
recA	Streptococcus pyogenes NZ131	60.615	95.308	0.578
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.199	92.962	0.569
recA	Latilactobacillus sakei subsp. sakei 23K	60.125	94.135	0.566
recA	Lactococcus lactis subsp. cremoris KW2	59.133	94.721	0.56