Detailed information NTG0089051

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: Pcarn_RS11420
• Genome accession: NZ_AP024881
• Coordinates: 2501377..2502354 (-)
• Length: 325 a.a.
• NCBI ID: WP_261833990.1
• Uniprot ID: -
• Organism: Vibrio ishigakensis strain C1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2496377..2507354

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Pcarn_RS11400	recX	2496528..2496995 (-)	468	WP_261833986.1	recombination regulator RecX	-
Pcarn_RS11405	recA	2497059..2498084 (-)	1026	WP_261833987.1	recombinase RecA	Machinery gene
Pcarn_RS11410	-	2498191..2498685 (-)	495	WP_261833988.1	CinA family protein	-
Pcarn_RS11415	mutS	2498759..2501332 (+)	2574	WP_261833989.1	DNA mismatch repair protein MutS	-
Pcarn_RS11420	rpoS	2501377..2502354 (-)	978	WP_261833990.1	RNA polymerase sigma factor RpoS	Regulator
Pcarn_RS11425	-	2502403..2503239 (-)	837	WP_261833991.1	peptidoglycan DD-metalloendopeptidase family protein	-
Pcarn_RS11430	-	2503244..2503870 (-)	627	WP_261833992.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
Pcarn_RS11435	surE	2503874..2504614 (-)	741	WP_261833993.1	5'/3'-nucleotidase SurE	-
Pcarn_RS11440	truD	2504611..2505639 (-)	1029	WP_261833994.1	tRNA pseudouridine(13) synthase TruD	-
Pcarn_RS11445	ispF	2505647..2506126 (-)	480	WP_261833995.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
Pcarn_RS11450	ispD	2506123..2506818 (-)	696	WP_261833996.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
Pcarn_RS11455	ftsB	2506838..2507113 (-)	276	WP_261833997.1	cell division protein FtsB	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 37316.26 Da
• Isoelectric Point: 4.5404

>NTDB_id=89051 Pcarn_RS11420 WP_261833990.1 2501377..2502354(-) (rpoS) [Vibrio ishigakensis strain C1]
MSMDNTAAKVEDLAQNSDEMEVASVELERVVEEPEVKEEFDASAKNLDATQLYLGEIGFSPLLTAEEEVLYARRALRGDE
AARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLP
IHVVKELNIYLRTARELSQKLDHEPTAEEIAQQLDKPVDDVSKMLRLNERVSSVDTPIGGDGDKALLDIIPDINNSDPEV
STQDEDIKHSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILLKQGLNMESLF
NFDSE

Nucleotide

• Length: 978 bp

>NTDB_id=89051 Pcarn_RS11420 WP_261833990.1 2501377..2502354(-) (rpoS) [Vibrio ishigakensis strain C1]
ATGAGTATGGATAACACAGCAGCAAAAGTGGAAGACTTGGCTCAAAACAGTGATGAAATGGAAGTCGCTAGCGTTGAGCT
TGAGCGTGTAGTCGAAGAGCCAGAGGTAAAAGAAGAGTTTGATGCCTCGGCGAAAAATCTAGACGCAACACAACTCTATT
TGGGTGAGATTGGCTTCTCCCCACTCCTTACTGCAGAAGAAGAAGTTCTGTACGCCCGTCGCGCCCTTCGTGGTGATGAA
GCAGCTCGCAAACGCATGATCGAGAGTAACCTTCGCCTAGTGGTGAAGATCTCCCGTCGCTATAGCAATCGCGGTCTAGC
GCTACTAGATCTCATCGAAGAGGGTAACCTTGGCCTTATTCGTGCCGTTGAGAAGTTCGATCCAGAGCGTGGTTTCCGTT
TCTCAACCTATGCAACTTGGTGGATTCGCCAGACCATTGAACGCGCACTGATGAATCAGACACGTACTATTCGTTTGCCT
ATTCACGTAGTAAAAGAGCTAAACATCTACTTGCGTACCGCGCGTGAACTGTCTCAGAAACTCGACCATGAGCCGACAGC
GGAAGAGATCGCACAGCAACTTGATAAGCCTGTAGATGATGTAAGCAAGATGCTTCGCCTGAATGAGCGTGTGAGCTCCG
TAGATACCCCAATCGGTGGTGACGGCGATAAGGCACTGCTAGACATTATTCCTGATATCAATAACTCTGATCCAGAGGTA
TCAACTCAGGATGAGGATATCAAACACTCGCTTATCGATTGGTTAGATGAGCTAAACCCAAAACAGAAAGAAGTGTTAGC
CCGCCGCTTTGGTCTGCTTGGCTATGAGCCATCCACTCTGGAAGAGGTGGGACGCGAGATCAATCTAACCCGTGAACGTG
TTCGCCAGATCCAAGTAGAAGGCCTACGCCGTCTGCGTGAAATCCTGCTGAAACAGGGTTTGAATATGGAGTCGCTATTT
AACTTCGATAGCGAATAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (48-81)

• Sigma-70 region 2 (Sigma70_r2) (86-155)

• Sigma-70 region 3 (Sigma70_r3) (166-239)

• Sigma-70, region 4 (Sigma70_r4) (254-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.53	100	0.843