Detailed information NTG0088921

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: OCU46_RS02225
• Genome accession: NZ_AP024866
• Coordinates: 458597..459622 (+)
• Length: 341 a.a.
• NCBI ID: WP_141273267.1
• Uniprot ID: A0A4Y3ISC9
• Organism: Vibrio comitans strain LMG 23416
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 453597..464622

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU46_RS02210	rpoS	454284..455258 (+)	975	WP_141273261.1	RNA polymerase sigma factor RpoS	Regulator
OCU46_RS02215	mutS	455347..457914 (-)	2568	WP_141273263.1	DNA mismatch repair protein MutS	-
OCU46_RS02220	pncC	457997..458491 (+)	495	WP_208733576.1	nicotinamide-nucleotide amidase	-
OCU46_RS02225	recA	458597..459622 (+)	1026	WP_141273267.1	recombinase RecA	Machinery gene
OCU46_RS02230	recX	459727..460179 (+)	453	WP_141273269.1	recombination regulator RecX	-
OCU46_RS02235	alaS	460359..462950 (+)	2592	WP_141273271.1	alanine--tRNA ligase	-
OCU46_RS02240	-	463099..464271 (+)	1173	WP_141273273.1	aspartate kinase	-
OCU46_RS02245	csrA	464349..464546 (+)	198	WP_004415691.1	carbon storage regulator CsrA	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 36843.14 Da
• Isoelectric Point: 5.1609

>NTDB_id=88921 OCU46_RS02225 WP_141273267.1 458597..459622(+) (recA) [Vibrio comitans strain LMG 23416]
MDDNKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYQGDKIGQGKANAGKFLREHPETAHEIDT
KLREMLLTTAQLEDTQEAEVE

Nucleotide

• Length: 1026 bp

>NTDB_id=88921 OCU46_RS02225 WP_141273267.1 458597..459622(+) (recA) [Vibrio comitans strain LMG 23416]
ATGGACGATAACAAGCAAAAAGCTCTCGCGGCTGCACTTGGCCAAATAGAAAAACAATTCGGTAAAGGCTCAATTATGCG
CCTTGGTGATAACCGCACCATGGACGTAGAAACAATTTCTACTGGTTCACTGTCTCTAGACATCGCTCTAGGTGCTGGTG
GTCTGCCAATGGGACGTATCGTAGAAGTATACGGTCCTGAATCATCGGGTAAAACAACACTAACTCTAGAGTTGATTGCG
GCAGCTCAACGTGAAGGTAAAACCTGTGCCTTTATCGATGCAGAGCACGCACTAGACCCTATTTATGCTCAAAAGCTTGG
CGTAAACATCGATGCTCTTTTAGTTTCTCAGCCAGATACCGGCGAGCAAGCGTTAGAGATCTGTGATGCACTAGCTCGCT
CTGGCGCTATCGACGTATTGGTTGTCGATTCAGTAGCAGCACTAACACCAAAAGCTGAAATTGAAGGCGAAATGGGTGAC
AGCCACATGGGTCTTCAGGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTAACGGGTAACCTAAAGCAATCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACAACGACTGGTGGTAACGCAC
TTAAGTTCTATGCATCGGTTCGTCTTGATATCCGTCGTACTGGCGCTATCAAAGATGGTGATGAGGTTGTTGGTAACGAA
ACCCGTATTAAGGTTGTTAAGAACAAGATTGCTGCACCGTTTAAGCAAGCAGAAACTCAAATTATGTATGGTCAAGGCTT
TAACCGTGAAGGTGAGCTGATTGATCTGGGTGTTAAGCACAAGCTAGTAGAAAAAGCGGGTGCGTGGTACAGCTACCAAG
GCGATAAGATTGGCCAAGGTAAAGCAAACGCAGGTAAATTCCTTCGCGAGCACCCTGAAACAGCACACGAAATCGATACT
AAGCTACGTGAAATGTTGCTGACTACAGCTCAACTTGAAGATACTCAAGAGGCTGAGGTAGAGTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

3D structure

• AlphaFold DB: A0A4Y3ISC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	90.691	97.654	0.886
recA	Vibrio cholerae O1 biovar El Tor strain E7946	90.691	97.654	0.886
recA	Pseudomonas stutzeri DSM 10701	73.529	99.707	0.733
recA	Acinetobacter baumannii D1279779	71.304	100	0.721
recA	Acinetobacter baylyi ADP1	71.848	100	0.718
recA	Neisseria gonorrhoeae MS11	66.862	100	0.669
recA	Neisseria gonorrhoeae MS11	66.862	100	0.669
recA	Neisseria gonorrhoeae strain FA1090	66.862	100	0.669
recA	Glaesserella parasuis strain SC1401	70.37	95.015	0.669
recA	Ralstonia pseudosolanacearum GMI1000	69.325	95.601	0.663
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.577	93.548	0.604
recA	Bacillus subtilis subsp. subtilis str. 168	63.551	94.135	0.598
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	61.145	97.361	0.595
recA	Streptococcus pneumoniae Rx1	62.539	94.721	0.592
recA	Streptococcus pneumoniae D39	62.539	94.721	0.592
recA	Streptococcus pneumoniae TIGR4	62.539	94.721	0.592
recA	Streptococcus pneumoniae R6	62.539	94.721	0.592
recA	Helicobacter pylori strain NCTC11637	61.468	95.894	0.589
recA	Helicobacter pylori 26695	61.162	95.894	0.587
recA	Streptococcus pyogenes NZ131	61.538	95.308	0.587
recA	Streptococcus mitis SK321	61.61	94.721	0.584
recA	Streptococcus mitis NCTC 12261	61.61	94.721	0.584
recA	Streptococcus mutans UA159	60.923	95.308	0.581
recA	Latilactobacillus sakei subsp. sakei 23K	61.371	94.135	0.578
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.442	93.548	0.575
recA	Lactococcus lactis subsp. cremoris KW2	59.443	94.721	0.563