Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AABK03_RS01980 Genome accession   NZ_AP027676
Coordinates   432092..432724 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain PSS-08-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 427092..437724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK03_RS01955 (VEE18_03830) yhfG 427224..427391 (+) 168 WP_000736862.1 YhfG family protein -
  AABK03_RS01960 (VEE18_03840) fic 427381..427983 (+) 603 WP_001280641.1 putative adenosine monophosphate-protein transferase Fic -
  AABK03_RS01965 (VEE18_03850) pabA 428015..428578 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  AABK03_RS01970 (VEE18_03860) argD 428664..429884 (+) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AABK03_RS01975 (VEE18_03870) yhfK 429951..432041 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  AABK03_RS01980 (VEE18_03880) crp 432092..432724 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AABK03_RS01985 (VEE18_03890) yhfA 433026..433430 (+) 405 WP_001148908.1 OsmC family protein -
  AABK03_RS01990 (VEE18_03900) prkB 433485..434354 (-) 870 WP_001274680.1 phosphoribulokinase -
  AABK03_RS01995 (VEE18_03910) yheU 434408..434626 (-) 219 WP_000907085.1 YheU family protein -
  AABK03_RS02000 (VEE18_03920) yheT 434620..435642 (-) 1023 WP_089582130.1 hydrolase -
  AABK03_RS02005 (VEE18_03930) yheS 435642..437555 (-) 1914 WP_089582129.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=88921 AABK03_RS01980 WP_000242755.1 432092..432724(-) (crp) [Escherichia coli strain PSS-08-1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=88921 AABK03_RS01980 WP_000242755.1 432092..432724(-) (crp) [Escherichia coli strain PSS-08-1]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment