Detailed information NTG0088919

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OCU46_RS02210
• Genome accession: NZ_AP024866
• Coordinates: 454284..455258 (+)
• Length: 324 a.a.
• NCBI ID: WP_141273261.1
• Uniprot ID: A0A4Y3IT39
• Organism: Vibrio comitans strain LMG 23416
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 449284..460258

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU46_RS02175	ftsB	449495..449770 (+)	276	WP_141273249.1	cell division protein FtsB	-
OCU46_RS02180	ispD	449793..450494 (+)	702	WP_141273251.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OCU46_RS02185	ispF	450491..450970 (+)	480	WP_141273253.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OCU46_RS02190	truD	450987..451970 (+)	984	WP_141273254.1	tRNA pseudouridine(13) synthase TruD	-
OCU46_RS02195	surE	451985..452728 (+)	744	WP_141273256.1	5'/3'-nucleotidase SurE	-
OCU46_RS02200	-	452729..453355 (+)	627	WP_141273257.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OCU46_RS02205	nlpD	453360..454232 (+)	873	WP_141273259.1	murein hydrolase activator NlpD	-
OCU46_RS02210	rpoS	454284..455258 (+)	975	WP_141273261.1	RNA polymerase sigma factor RpoS	Regulator
OCU46_RS02215	mutS	455347..457914 (-)	2568	WP_141273263.1	DNA mismatch repair protein MutS	-
OCU46_RS02220	pncC	457997..458491 (+)	495	WP_208733576.1	nicotinamide-nucleotide amidase	-
OCU46_RS02225	recA	458597..459622 (+)	1026	WP_141273267.1	recombinase RecA	Machinery gene
OCU46_RS02230	recX	459727..460179 (+)	453	WP_141273269.1	recombination regulator RecX	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37163.10 Da
• Isoelectric Point: 4.6073

>NTDB_id=88919 OCU46_RS02210 WP_141273261.1 454284..455258(+) (rpoS) [Vibrio comitans strain LMG 23416]
MSMDNTAAKVEDLAEDKVSAEIEESSIVEKVETQVKEEFDASTKNLDATQLYLGEIGFSPLLTAEEEVLYARRALRGDEA
ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQKLDHEPTAEEIAQQLDKPVDDVSKMLRLNERVSSVDTPIGGDGDKALLDIIPDINNSDPEVS
TQDDDIKHSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILLKQGLNMESLFN
FDSE

Nucleotide

• Length: 975 bp

>NTDB_id=88919 OCU46_RS02210 WP_141273261.1 454284..455258(+) (rpoS) [Vibrio comitans strain LMG 23416]
ATGAGTATGGATAACACTGCAGCAAAAGTGGAAGACCTAGCAGAAGACAAGGTTAGTGCGGAGATAGAAGAAAGTAGTAT
TGTTGAAAAAGTGGAAACTCAGGTAAAAGAAGAGTTTGATGCTTCAACAAAGAATCTAGACGCAACTCAACTTTACCTTG
GCGAAATCGGCTTCTCCCCACTCCTAACAGCAGAAGAAGAGGTTCTTTACGCAAGACGAGCACTTCGCGGAGACGAAGCT
GCACGCAAGCGTATGATTGAAAGTAACCTACGTCTTGTCGTCAAAATTTCTCGTCGTTACAGTAATCGAGGCTTAGCTCT
ATTAGACCTAATTGAAGAGGGTAACCTCGGTCTAATTCGCGCTGTGGAAAAATTCGATCCCGAGCGTGGTTTCCGATTCT
CTACTTACGCAACTTGGTGGATTCGACAAACTATCGAACGTGCTCTGATGAACCAAACCCGCACTATCCGCCTGCCGATT
CATGTGGTTAAAGAGCTTAATATTTACCTGAGAACAGCTCGTGAGTTATCTCAGAAACTAGACCATGAGCCAACCGCAGA
AGAGATTGCACAGCAGCTTGATAAACCGGTTGATGATGTAAGCAAGATGCTACGCCTCAATGAGCGTGTAAGCTCAGTGG
ATACCCCAATTGGTGGTGACGGTGACAAAGCATTGCTTGATATCATTCCTGATATCAACAACTCAGACCCTGAAGTTTCT
ACCCAAGATGACGATATTAAGCACTCTCTGATCGATTGGCTTGATGAGTTAAATCCAAAACAGAAAGAAGTACTTGCTCG
CCGCTTCGGTTTACTTGGTTATGAACCGTCAACCCTAGAAGAGGTTGGTCGCGAAATTAACCTAACTCGTGAGCGTGTAC
GTCAGATCCAAGTGGAAGGTCTACGTCGACTACGTGAAATCCTGTTGAAACAAGGGCTAAACATGGAGTCGCTGTTCAAC
TTCGACAGTGAATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (165-238)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (47-80)

• Sigma-70 region 2 (Sigma70_r2) (85-154)

• Sigma-70, region 4 (Sigma70_r4) (253-306)

3D structure

• AlphaFold DB: A0A4Y3IT39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.831	100	0.849