Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RWA16_RS04345 Genome accession   NZ_CP136128
Coordinates   898198..899241 (+) Length   347 a.a.
NCBI ID   WP_087911832.1    Uniprot ID   A0AAN1EY92
Organism   Lacticaseibacillus casei strain LMG 24099     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 893198..904241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA16_RS04325 (RWA16_04325) ymfI 894287..895015 (+) 729 WP_087911829.1 elongation factor P 5-aminopentanone reductase -
  RWA16_RS04330 (RWA16_04330) - 895102..896040 (+) 939 WP_087911830.1 helix-turn-helix domain-containing protein -
  RWA16_RS04335 (RWA16_04335) pgsA 896037..896630 (+) 594 WP_025012513.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RWA16_RS04340 (RWA16_04340) cinA 896902..898143 (+) 1242 WP_087911831.1 competence/damage-inducible protein A Machinery gene
  RWA16_RS04345 (RWA16_04345) recA 898198..899241 (+) 1044 WP_087911832.1 recombinase RecA Machinery gene
  RWA16_RS04350 (RWA16_04350) rny 899842..901413 (+) 1572 WP_010489446.1 ribonuclease Y -
  RWA16_RS04355 (RWA16_04355) - 901559..902212 (-) 654 WP_049169075.1 YigZ family protein -
  RWA16_RS04360 (RWA16_04360) - 902240..903502 (+) 1263 WP_151466805.1 DEAD/DEAH box helicase -
  RWA16_RS04365 (RWA16_04365) - 903660..904178 (+) 519 WP_087911834.1 ComF family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37451.82 Da        Isoelectric Point: 5.3374

>NTDB_id=888742 RWA16_RS04345 WP_087911832.1 898198..899241(+) (recA) [Lacticaseibacillus casei strain LMG 24099]
MADTERQEALATALKKIEKNFGKGAIMKMGDKADTRVSAISSGSLAIDEVLGVGGLPRGRIVEMYGPESSGKTTVALHAV
AMVQQHGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVIDSVAALVPQAEIDGDMG
DAHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGIVFGNPEITPGGRALKFYATVRLEIRRSEQIKNGTEIIGN
RTKIKVVKNKVAPPFKVAIVDIMYGRGISQSGELVDMAVEKDIVEKSGSWYAYQGERIGQGREHAKTYLETHEEMRKKIE
GQVREAYGMPLNQVIEMEDPDESARAS

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=888742 RWA16_RS04345 WP_087911832.1 898198..899241(+) (recA) [Lacticaseibacillus casei strain LMG 24099]
GTGGCAGACACAGAACGACAAGAAGCGTTAGCAACAGCACTAAAAAAGATTGAAAAGAATTTTGGCAAAGGTGCCATCAT
GAAAATGGGGGACAAGGCTGATACGCGGGTTTCGGCCATTTCCAGTGGCTCACTTGCGATTGACGAAGTGCTTGGCGTTG
GTGGGTTGCCACGCGGGCGGATTGTTGAGATGTACGGTCCTGAAAGCTCCGGGAAAACCACCGTTGCCTTGCATGCGGTG
GCAATGGTGCAGCAGCATGGCGGAACCGCCGCGTATATTGATGCGGAAAATGCCATGGATCCTAAGTATGCGACCGCGCT
GGGCGTCAATATTGATGAACTGTTGCTCTCTCAACCGGATACTGGAGAACAAGGGCTGGAAATTGCTGACGAGCTGGTGG
CCTCTGGAGCAATTGATATTCTGGTGATTGATTCGGTGGCCGCGCTGGTTCCGCAAGCCGAGATTGACGGCGATATGGGC
GATGCGCACGTTGGCCTACAGGCGCGACTGATGTCACAAGCGCTGCGGAAGCTGTCTGGCAACATCAGTAAGACGAAAAC
TATTGCCGTCTTTATTAACCAAATTCGTGAGAAAGTCGGCATCGTTTTTGGCAACCCAGAAATAACCCCGGGTGGTCGGG
CATTAAAGTTTTATGCAACAGTGCGGCTGGAAATCCGCCGTTCCGAACAGATTAAAAACGGTACTGAGATTATCGGTAAT
CGCACTAAAATCAAGGTCGTTAAAAATAAAGTGGCGCCGCCTTTTAAAGTGGCGATTGTGGACATTATGTATGGCCGTGG
CATTTCGCAAAGCGGTGAACTCGTCGATATGGCGGTTGAAAAAGACATCGTTGAAAAGTCCGGGTCGTGGTATGCCTACC
AAGGTGAGCGAATCGGCCAAGGACGCGAGCATGCCAAGACTTATCTTGAAACTCATGAGGAAATGCGTAAAAAGATTGAG
GGGCAAGTGCGTGAGGCATACGGGATGCCGTTAAATCAGGTGATTGAAATGGAAGATCCGGATGAATCGGCGCGAGCTTC
ATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.705

100

0.778
  recA Bacillus subtilis subsp. subtilis str. 168

70.181

95.677

0.671
  recA Streptococcus mitis NCTC 12261

64.058

99.424

0.637
  recA Streptococcus pyogenes NZ131

66.869

94.813

0.634
  recA Lactococcus lactis subsp. cremoris KW2

66.869

94.813

0.634
  recA Streptococcus mutans UA159

66.565

94.813

0.631
  recA Streptococcus mitis SK321

65.957

94.813

0.625
  recA Streptococcus pneumoniae Rx1

65.957

94.813

0.625
  recA Streptococcus pneumoniae D39

65.957

94.813

0.625
  recA Streptococcus pneumoniae R6

65.957

94.813

0.625
  recA Streptococcus pneumoniae TIGR4

65.957

94.813

0.625
  recA Ralstonia pseudosolanacearum GMI1000

61.774

94.236

0.582
  recA Acinetobacter baumannii D1279779

58.358

98.271

0.573
  recA Acinetobacter baylyi ADP1

60.681

93.084

0.565
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.788

95.101

0.559
  recA Vibrio cholerae strain A1552

58.788

95.101

0.559
  recA Neisseria gonorrhoeae MS11

61.006

91.643

0.559
  recA Neisseria gonorrhoeae MS11

61.006

91.643

0.559
  recA Neisseria gonorrhoeae strain FA1090

61.006

91.643

0.559
  recA Pseudomonas stutzeri DSM 10701

59.938

92.795

0.556
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.021

94.236

0.556
  recA Glaesserella parasuis strain SC1401

56.342

97.695

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.824

93.084

0.548
  recA Helicobacter pylori strain NCTC11637

54.913

99.712

0.548
  recA Helicobacter pylori 26695

54.624

99.712

0.545
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.573

94.524

0.516