Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RWA16_RS04340 Genome accession   NZ_CP136128
Coordinates   896902..898143 (+) Length   413 a.a.
NCBI ID   WP_087911831.1    Uniprot ID   A0AAN1EYA6
Organism   Lacticaseibacillus casei strain LMG 24099     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 891902..903143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA16_RS04320 (RWA16_04320) yfmH 892995..894290 (+) 1296 WP_087911828.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  RWA16_RS04325 (RWA16_04325) ymfI 894287..895015 (+) 729 WP_087911829.1 elongation factor P 5-aminopentanone reductase -
  RWA16_RS04330 (RWA16_04330) - 895102..896040 (+) 939 WP_087911830.1 helix-turn-helix domain-containing protein -
  RWA16_RS04335 (RWA16_04335) pgsA 896037..896630 (+) 594 WP_025012513.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RWA16_RS04340 (RWA16_04340) cinA 896902..898143 (+) 1242 WP_087911831.1 competence/damage-inducible protein A Machinery gene
  RWA16_RS04345 (RWA16_04345) recA 898198..899241 (+) 1044 WP_087911832.1 recombinase RecA Machinery gene
  RWA16_RS04350 (RWA16_04350) rny 899842..901413 (+) 1572 WP_010489446.1 ribonuclease Y -
  RWA16_RS04355 (RWA16_04355) - 901559..902212 (-) 654 WP_049169075.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44162.56 Da        Isoelectric Point: 6.3712

>NTDB_id=888741 RWA16_RS04340 WP_087911831.1 896902..898143(+) (cinA) [Lacticaseibacillus casei strain LMG 24099]
MQAEIIAVGTEILMGQITNTNGAYMAKQLAALGIASYHQQVVGDNAQRLADAISLAEKRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDADAMAKLAARVKQQQRPMTPNNKLQAMYPQGADILVNRVGLAVGAWVEQHQHAYVLLPGPPKEFIPMV
DHELLPHLAKYSGHHEAFVSRVMRFFGVGESQLVTDLGDLIAKQTNPTLATYIKDHEVTIRVTASGETQADAEAKLEPVI
GAIMDREGRYFYGYGDDNSLAKELVKALAATDKQITAAESLTAGAFQAALGDVPGVSDYFKGGFVTYALATKAAFLNIDA
RELAAHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDTLEGQPAGTVWIGLARMGQAPVAQIYHFPGGRNDVRKRAV
MTGMMIALKSLRD

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=888741 RWA16_RS04340 WP_087911831.1 896902..898143(+) (cinA) [Lacticaseibacillus casei strain LMG 24099]
ATGCAAGCAGAAATTATTGCTGTCGGAACTGAAATTCTGATGGGACAGATTACTAATACTAATGGCGCCTATATGGCTAA
ACAGTTGGCCGCTTTAGGCATTGCCAGCTATCATCAACAGGTTGTCGGTGACAATGCGCAACGCCTGGCTGATGCGATCA
GCTTAGCCGAAAAACGCAGTGATATCGTGATTTTGATCGGTGGTTTAGGACCCACACCAGATGATCTGACGAAACAAACG
TTGGCTGCTCATCTGAATTTACCGTTGGTTGAAGATGCGGACGCCATGGCAAAACTGGCGGCTCGGGTTAAACAACAGCA
GCGGCCGATGACGCCAAATAATAAGTTACAGGCGATGTATCCGCAAGGTGCTGATATATTGGTTAATCGCGTCGGGCTGG
CAGTCGGTGCCTGGGTCGAACAACACCAACATGCCTATGTACTACTGCCTGGGCCGCCTAAGGAATTTATTCCAATGGTT
GATCATGAGCTATTGCCTCATTTGGCCAAGTATAGCGGCCATCATGAAGCTTTTGTCAGCCGCGTCATGCGCTTCTTTGG
TGTTGGTGAATCACAATTGGTGACAGATTTAGGTGACTTGATTGCCAAGCAAACGAATCCGACATTAGCCACTTACATCA
AGGATCATGAGGTGACTATTCGGGTGACGGCCAGCGGTGAGACCCAAGCAGACGCTGAAGCAAAATTGGAACCGGTGATT
GGCGCTATTATGGATCGCGAGGGACGTTACTTTTATGGTTATGGTGATGATAATAGCCTCGCTAAAGAGTTGGTCAAGGC
ATTAGCGGCGACCGATAAGCAAATAACAGCAGCGGAGAGTTTGACAGCCGGTGCGTTCCAGGCGGCTTTGGGGGATGTTC
CCGGCGTCTCGGATTATTTCAAAGGTGGTTTTGTGACGTACGCATTAGCCACTAAAGCAGCATTTTTGAATATTGATGCG
CGTGAGTTAGCGGCTCATGGGGTGGTGAGTGAATTTACCGCCAAAGCGATGGCCGAGCACGCCCGTCAGCGGGCTGCGGC
CGATATTGCAGTCAGTTTTACCGGCGTGGCCGGGCCCGACACACTGGAAGGGCAGCCAGCCGGGACAGTTTGGATCGGCT
TGGCGCGGATGGGCCAAGCGCCGGTTGCACAGATCTATCATTTTCCCGGTGGCCGCAATGATGTTCGCAAACGCGCGGTT
ATGACCGGCATGATGATCGCATTGAAGAGCTTGCGGGATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.594

100

0.516
  cinA Streptococcus mitis NCTC 12261

50.594

100

0.516
  cinA Streptococcus mutans UA159

50.725

100

0.508
  cinA Streptococcus pneumoniae TIGR4

49.881

100

0.508
  cinA Streptococcus pneumoniae Rx1

49.406

100

0.504
  cinA Streptococcus pneumoniae R6

49.406

100

0.504
  cinA Streptococcus pneumoniae D39

49.169

100

0.501
  cinA Bacillus subtilis subsp. subtilis str. 168

44.878

99.274

0.446
  cinA Streptococcus suis isolate S10

42.147

92.494

0.39