Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RS399_RS00790 Genome accession   NZ_CP135973
Coordinates   179149..180195 (-) Length   348 a.a.
NCBI ID   WP_003238440.1    Uniprot ID   A0A9W5PD68
Organism   Bacillus inaquosorum strain SI3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 174149..185195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS00770 (RS399_00770) spoVS 174644..174904 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  RS399_RS00775 (RS399_00775) ymdB 175104..175898 (-) 795 WP_003238436.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  RS399_RS00780 (RS399_00780) rny 175968..177530 (-) 1563 WP_003221010.1 ribonuclease Y -
  RS399_RS00785 (RS399_00785) - 177806..178981 (-) 1176 WP_084992407.1 serine hydrolase domain-containing protein -
  RS399_RS00790 (RS399_00790) recA 179149..180195 (-) 1047 WP_003238440.1 recombinase RecA Machinery gene
  RS399_RS00795 (RS399_00795) cinA 180368..181618 (-) 1251 WP_084992409.1 competence/damage-inducible protein A Machinery gene
  RS399_RS00800 (RS399_00800) pgsA 181637..182218 (-) 582 WP_003238444.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RS399_RS00805 (RS399_00805) rodZ 182268..183134 (-) 867 WP_232919113.1 cell shape determination protein RodZ -
  RS399_RS00810 (RS399_00810) - 183201..183992 (-) 792 WP_003220998.1 YmfK family protein -
  RS399_RS00815 (RS399_00815) - 184122..184379 (-) 258 WP_003238448.1 DUF3243 domain-containing protein -
  RS399_RS00820 (RS399_00820) ymfI 184460..185188 (-) 729 WP_084992411.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38052.22 Da        Isoelectric Point: 4.7904

>NTDB_id=887982 RS399_RS00790 WP_003238440.1 179149..180195(-) (recA) [Bacillus inaquosorum strain SI3]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNHGVVQQQAEEAQEELEFEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=887982 RS399_RS00790 WP_003238440.1 179149..180195(-) (recA) [Bacillus inaquosorum strain SI3]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGTAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGCGGCTCCCTCGCTCTTGATACGGCACTGGGAATTGGCGGAT
ATCCGCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTTGCGCTCCATGCGATTGCTGAG
GTTCAGCAGCAAGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAGAAGCTCGGAGT
CAACATCGAAGAGCTCTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCGTTGGTTCGAAGCG
GTGCAGTTGACATTGTCGTAGTCGACTCTGTGGCGGCTCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCA
CATGTCGGTTTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGAAGACAATTGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGAAACCCGGAAACAACTCCTGGCGGCCGTGCGCTGA
AATTCTACTCTTCTGTGCGTCTCGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTAAAAAACAAGGTGGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATCTC
AAAAGAAGGCGAAATCATTGATCTTGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGTGAACATTACGGCTTGGATAATCACGGCGTAGTGCAGCAGCAAGCTGAAGAGGCACAAGAAGAACTCGAATTTGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

99.425

100

0.994
  recA Latilactobacillus sakei subsp. sakei 23K

74.924

93.966

0.704
  recA Streptococcus pneumoniae R6

66.477

100

0.672
  recA Streptococcus pneumoniae TIGR4

66.477

100

0.672
  recA Streptococcus pneumoniae Rx1

66.477

100

0.672
  recA Streptococcus pneumoniae D39

66.477

100

0.672
  recA Streptococcus mutans UA159

65.903

100

0.661
  recA Streptococcus mitis NCTC 12261

66.86

98.851

0.661
  recA Streptococcus mitis SK321

68.485

94.828

0.649
  recA Streptococcus pyogenes NZ131

67.683

94.253

0.638
  recA Lactococcus lactis subsp. cremoris KW2

65.758

94.828

0.624
  recA Helicobacter pylori 26695

62.791

98.851

0.621
  recA Helicobacter pylori strain NCTC11637

62.791

98.851

0.621
  recA Neisseria gonorrhoeae strain FA1090

65.046

94.54

0.615
  recA Neisseria gonorrhoeae MS11

65.046

94.54

0.615
  recA Neisseria gonorrhoeae MS11

65.046

94.54

0.615
  recA Ralstonia pseudosolanacearum GMI1000

64.742

94.54

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.561

99.425

0.612
  recA Vibrio cholerae strain A1552

61.561

99.425

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.988

98.276

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

93.966

0.601
  recA Glaesserella parasuis strain SC1401

60.29

99.138

0.598
  recA Acinetobacter baumannii D1279779

60.947

97.126

0.592
  recA Pseudomonas stutzeri DSM 10701

62.813

91.954

0.578
  recA Acinetobacter baylyi ADP1

62.422

92.529

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563