Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RS399_RS00795 Genome accession   NZ_CP135973
Coordinates   180368..181618 (-) Length   416 a.a.
NCBI ID   WP_084992409.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SI3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 175368..186618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS00780 (RS399_00780) rny 175968..177530 (-) 1563 WP_003221010.1 ribonuclease Y -
  RS399_RS00785 (RS399_00785) - 177806..178981 (-) 1176 WP_084992407.1 serine hydrolase domain-containing protein -
  RS399_RS00790 (RS399_00790) recA 179149..180195 (-) 1047 WP_003238440.1 recombinase RecA Machinery gene
  RS399_RS00795 (RS399_00795) cinA 180368..181618 (-) 1251 WP_084992409.1 competence/damage-inducible protein A Machinery gene
  RS399_RS00800 (RS399_00800) pgsA 181637..182218 (-) 582 WP_003238444.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RS399_RS00805 (RS399_00805) rodZ 182268..183134 (-) 867 WP_232919113.1 cell shape determination protein RodZ -
  RS399_RS00810 (RS399_00810) - 183201..183992 (-) 792 WP_003220998.1 YmfK family protein -
  RS399_RS00815 (RS399_00815) - 184122..184379 (-) 258 WP_003238448.1 DUF3243 domain-containing protein -
  RS399_RS00820 (RS399_00820) ymfI 184460..185188 (-) 729 WP_084992411.1 elongation factor P 5-aminopentanone reductase -
  RS399_RS00825 (RS399_00825) yfmH 185243..186529 (-) 1287 WP_084992413.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45526.91 Da        Isoelectric Point: 5.3834

>NTDB_id=887983 RS399_RS00795 WP_084992409.1 180368..181618(-) (cinA) [Bacillus inaquosorum strain SI3]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANALGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITISAAESFTGGLFSEWLTDLSGASKLFAGGVVCYTNDVKQNVLG
VKKETLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDTQEGHEPGHVFIGISANGKEEIHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=887983 RS399_RS00795 WP_084992409.1 180368..181618(-) (cinA) [Bacillus inaquosorum strain SI3]
ATGGAATTTCCAAAAAAAGCAGAAATTATTGCAGTCGGTTCAGAGCTGTTGCTTGGCCAGATCGCCAATACAAATGCTCA
ATTTATCAGTAAACAGCTCGCTGAGATCGGAGTTAACGTATTTTATCATACAGCAGTCGGAGATAATCCGGAGCGGCTGA
AGCAAGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGTCTCGGACCGACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAACGCGCTGGGACGTCCACTCGTATTAAATGATGAAGCGTTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGCAAACAGGCGCTTGTGATCGAAGGATCTGACGTACTGGCGAATC
ACTTTGGAATGGCGCCGGGAATGCTCACAGAGCATGAATCGCGCTTTTATATGCTTCTTCCTGGGCCGCCAAGCGAGTTG
CGTCCAATGTTTGAAAATGAAGCAAAGCCTCTTCTGCTGAAAAAGATGGGCTCAAATGAAAAAATTGTTTCAACTGTTCT
TCGCTTTTTCGGTATCGGCGAATCTCAGCTTGAAGCCGATTTGGAAGACATTATTGACGCACAAACGAACCCGACAATCG
CTCCTTTGGCGGCTGACGGAGAGGTGACGCTGCGACTGACAGCCAAACATGCTGACGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCTGTTATCTTAGAACGAGTCGGTGAATTTTTCTATGGCTACGATGATACTTCCCTTGTAAAAGAGCT
TTCTAAAGCATGTAAGGAAAAAGGCATTACGATTTCCGCGGCGGAAAGTTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CGGATCTTAGCGGTGCTTCAAAATTATTTGCCGGCGGCGTCGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGC
GTCAAGAAGGAAACATTAGATCGTTTTGGCGCGGTCAGCAAGGAGTGCGCATCAGAGCTGGCAAAGGGTGTTCAAAAGCT
CACTGGCAGCGACATCGGCATCAGCTTTACCGGTGTAGCAGGACCTGATACTCAAGAAGGGCATGAGCCTGGACATGTGT
TTATCGGTATTTCAGCAAATGGAAAAGAAGAGATTCACGAGTTTCACTTTGCCGGCTCCAGAACGGGAATCAGAAAACGA
GGCGCTAAATACGGCTGCCATTTAATCTTGAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

98.558

100

0.986
  cinA Streptococcus mitis SK321

45.455

100

0.457
  cinA Streptococcus mitis NCTC 12261

45.455

100

0.457
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus pneumoniae TIGR4

45.215

100

0.454
  cinA Streptococcus pneumoniae Rx1

44.976

100

0.452
  cinA Streptococcus pneumoniae R6

44.976

100

0.452
  cinA Streptococcus pneumoniae D39

44.737

100

0.45
  cinA Streptococcus suis isolate S10

41.379

90.625

0.375