Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RUL31_RS09335 Genome accession   NZ_CP135964
Coordinates   1852001..1853044 (+) Length   347 a.a.
NCBI ID   WP_003328867.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1847001..1858044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS09305 (RUL31_09305) ymfI 1847005..1847733 (+) 729 WP_010788647.1 elongation factor P 5-aminopentanone reductase -
  RUL31_RS09310 (RUL31_09310) - 1847814..1848071 (+) 258 WP_003328873.1 DUF3243 domain-containing protein -
  RUL31_RS09315 (RUL31_09315) - 1848201..1848992 (+) 792 WP_003328872.1 YmfK family protein -
  RUL31_RS09320 (RUL31_09320) - 1849011..1849928 (+) 918 WP_315916916.1 RodZ family helix-turn-helix domain-containing protein -
  RUL31_RS09325 (RUL31_09325) pgsA 1849979..1850560 (+) 582 WP_003328870.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RUL31_RS09330 (RUL31_09330) cinA 1850579..1851829 (+) 1251 WP_010788650.1 competence/damage-inducible protein A Machinery gene
  RUL31_RS09335 (RUL31_09335) recA 1852001..1853044 (+) 1044 WP_003328867.1 recombinase RecA Machinery gene
  RUL31_RS09340 (RUL31_09340) - 1853330..1854559 (+) 1230 WP_315916917.1 serine hydrolase domain-containing protein -
  RUL31_RS09345 (RUL31_09345) rny 1854818..1856380 (+) 1563 WP_003328865.1 ribonuclease Y -
  RUL31_RS09350 (RUL31_09350) ymdB 1856450..1857244 (+) 795 WP_311187294.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  RUL31_RS09355 (RUL31_09355) spoVS 1857444..1857704 (+) 261 WP_003328863.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37899.08 Da        Isoelectric Point: 4.8474

>NTDB_id=887819 RUL31_RS09335 WP_003328867.1 1852001..1853044(+) (recA) [Bacillus atrophaeus strain CD303]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVAQKPEETQEELEFEG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=887819 RUL31_RS09335 WP_003328867.1 1852001..1853044(+) (recA) [Bacillus atrophaeus strain CD303]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGCAAAGGTTCTATTATGAAATT
GGGGGAAAAGACAGATACAAGAATTTCAACCGTACCAAGCGGCTCTCTTGCGCTTGATACAGCGCTTGGAATAGGCGGGT
ATCCGCGCGGACGGATTATCGAAGTATACGGACCGGAAAGCTCCGGTAAAACAACTGTTGCGCTTCATGCCATTGCAGAA
GTTCAGCAGCAGGGCGGACAAGCAGCGTTTATTGATGCTGAGCATGCATTGGACCCTGTATACGCGCAAAAGCTTGGCGT
TAATATTGAAGAGCTTTTACTTTCTCAGCCTGATACGGGCGAGCAGGCGCTTGAAATTGCTGAAGCGCTTGTCAGAAGCG
GCGCTGTTGACATTGTTGTCATTGACTCGGTGGCAGCTCTCGTTCCGAAAGCTGAAATTGAAGGAGACATGGGGGACTCA
CACGTAGGACTTCAAGCCCGCTTGATGTCTCAGGCGCTTCGTAAGCTTTCCGGAGCAATCAATAAGTCTAAAACGATTGC
TATTTTCATTAACCAGATTCGTGAAAAGGTCGGCGTCATGTTCGGAAATCCCGAGACAACTCCCGGAGGCCGTGCGCTGA
AATTTTATTCCTCTGTACGGTTAGAAGTGCGCCGTGCCGAACAGCTGAAGCAAGGCAACGACGTAATGGGGAACAAAACA
CGAATCAAAGTTGTGAAGAACAAGGTGGCTCCGCCGTTCCGTACGGCTGAGGTTGATATTATGTACGGAGAAGGGATCTC
AAAAGAAGGAGAGATCATTGATCTTGGAACTGAGCTCGATATTGTGCAAAAAAGCGGCTCTTGGTACTCTTACGAAGAAG
AGCGCCTTGGTCAAGGCCGTGAAAATGCAAAGCAGTTCTTAAAAGAAAACAAAGATATCATGCTGATGATTCAAGAGCAA
ATTCGCGAACATTACGGCTTGGATAACAATGGAGTTGCACAAAAGCCTGAGGAAACCCAAGAAGAGCTAGAATTTGAAGG
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

98.271

100

0.983
  recA Latilactobacillus sakei subsp. sakei 23K

74.924

94.236

0.706
  recA Streptococcus mutans UA159

65.903

100

0.663
  recA Streptococcus pneumoniae D39

65.896

99.712

0.657
  recA Streptococcus pneumoniae Rx1

65.896

99.712

0.657
  recA Streptococcus pneumoniae R6

65.896

99.712

0.657
  recA Streptococcus pneumoniae TIGR4

65.896

99.712

0.657
  recA Streptococcus mitis NCTC 12261

68.182

95.101

0.648
  recA Streptococcus mitis SK321

67.879

95.101

0.646
  recA Lactococcus lactis subsp. cremoris KW2

65.282

97.118

0.634
  recA Streptococcus pyogenes NZ131

67.073

94.524

0.634
  recA Neisseria gonorrhoeae strain FA1090

63.188

99.424

0.628
  recA Neisseria gonorrhoeae MS11

63.188

99.424

0.628
  recA Neisseria gonorrhoeae MS11

63.188

99.424

0.628
  recA Helicobacter pylori strain NCTC11637

62.974

98.847

0.622
  recA Helicobacter pylori 26695

62.974

98.847

0.622
  recA Ralstonia pseudosolanacearum GMI1000

64.329

94.524

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.303

94.236

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

94.236

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

92.507

0.591
  recA Vibrio cholerae strain A1552

63.863

92.507

0.591
  recA Acinetobacter baumannii D1279779

59.42

99.424

0.591
  recA Acinetobacter baylyi ADP1

59.706

97.983

0.585
  recA Glaesserella parasuis strain SC1401

61.702

94.813

0.585
  recA Pseudomonas stutzeri DSM 10701

62.813

92.219

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

92.219

0.556