Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RUL31_RS09330 Genome accession   NZ_CP135964
Coordinates   1850579..1851829 (+) Length   416 a.a.
NCBI ID   WP_010788650.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1845579..1856829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS09300 (RUL31_09300) yfmH 1845662..1846948 (+) 1287 WP_199680253.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  RUL31_RS09305 (RUL31_09305) ymfI 1847005..1847733 (+) 729 WP_010788647.1 elongation factor P 5-aminopentanone reductase -
  RUL31_RS09310 (RUL31_09310) - 1847814..1848071 (+) 258 WP_003328873.1 DUF3243 domain-containing protein -
  RUL31_RS09315 (RUL31_09315) - 1848201..1848992 (+) 792 WP_003328872.1 YmfK family protein -
  RUL31_RS09320 (RUL31_09320) - 1849011..1849928 (+) 918 WP_315916916.1 RodZ family helix-turn-helix domain-containing protein -
  RUL31_RS09325 (RUL31_09325) pgsA 1849979..1850560 (+) 582 WP_003328870.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RUL31_RS09330 (RUL31_09330) cinA 1850579..1851829 (+) 1251 WP_010788650.1 competence/damage-inducible protein A Machinery gene
  RUL31_RS09335 (RUL31_09335) recA 1852001..1853044 (+) 1044 WP_003328867.1 recombinase RecA Machinery gene
  RUL31_RS09340 (RUL31_09340) - 1853330..1854559 (+) 1230 WP_315916917.1 serine hydrolase domain-containing protein -
  RUL31_RS09345 (RUL31_09345) rny 1854818..1856380 (+) 1563 WP_003328865.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45198.46 Da        Isoelectric Point: 4.8535

>NTDB_id=887818 RUL31_RS09330 WP_010788650.1 1850579..1851829(+) (cinA) [Bacillus atrophaeus strain CD303]
MELGKKAEIIAVGSELLLGQITNTNAQFISKGLAEIGINVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANVLGRPLVLDDEAFQSIEDYFKKTKRTMSPNNRKQALVIEGSDVLANKFGMAPGMLTEHEARLYMLLPGPPSEL
HPMFENEAKPLLLEKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADESETERLL
KETEAVILDRVGEFFYGYDDTSLVKELSKACKEKGMTLSSAESFTGGLFAEWLTDLSGASQLFAGGVVCYSNEMKQHTLG
VKPDTLQQFGAVSKECAGELASGIKRLTGSDIGISFTGVAGPEGQEGHAPGHVFIGIFADGKEEVHEFNFAGSRTGVRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=887818 RUL31_RS09330 WP_010788650.1 1850579..1851829(+) (cinA) [Bacillus atrophaeus strain CD303]
ATGGAGTTAGGAAAAAAAGCAGAAATTATTGCGGTCGGTTCAGAGCTTTTACTCGGTCAGATCACTAATACAAATGCTCA
ATTTATCAGTAAAGGACTTGCCGAGATCGGCATTAATGTGTTTTATCATACAGCTGTCGGAGACAACCCTGAGCGGCTGA
AGCAAGTCATCCGCATTGCTGAAGAACGTTCTGATTTTATCATTTTTTCAGGGGGGCTCGGACCGACGAAGGATGATTTA
ACAAAAGAAACAATCGCAAATGTGCTGGGCCGTCCGCTCGTTCTTGATGATGAGGCTTTTCAATCAATTGAAGATTATTT
CAAGAAAACAAAGCGTACGATGTCACCGAATAACCGTAAACAGGCGCTTGTGATTGAAGGCTCAGACGTATTGGCTAATA
AATTCGGCATGGCGCCGGGGATGCTGACAGAGCACGAAGCCCGTCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAACTG
CACCCTATGTTTGAAAACGAGGCCAAGCCGCTTCTTCTAGAAAAACTCGGATCAAATGAAAAAATCGTTTCAACCGTTCT
CCGTTTTTTTGGAATCGGCGAGTCCCAGCTTGAAGCTGATTTAGAAGATATTATTGATGCACAGACCAATCCGACAATTG
CTCCTTTGGCTGCGGATGGAGAAGTGACGCTGCGCCTCACTGCAAAGCATGCGGATGAATCGGAAACAGAGCGGCTGCTA
AAAGAGACTGAAGCCGTGATTTTAGACCGTGTCGGAGAGTTTTTCTACGGGTATGATGATACATCTCTTGTCAAAGAGCT
TTCAAAAGCGTGCAAGGAAAAAGGAATGACCCTTTCTTCAGCGGAGAGCTTTACAGGCGGTCTGTTCGCTGAATGGCTGA
CTGATTTAAGCGGTGCTTCGCAATTGTTTGCCGGCGGCGTTGTTTGCTATTCAAATGAGATGAAGCAGCACACCTTGGGG
GTAAAGCCTGACACCCTGCAGCAGTTCGGAGCAGTCAGCAAAGAATGCGCGGGAGAGCTTGCCTCGGGGATTAAACGGCT
GACGGGCAGTGACATTGGAATCAGTTTTACCGGCGTGGCCGGTCCTGAAGGGCAAGAGGGCCATGCCCCGGGACATGTCT
TTATCGGCATTTTCGCGGACGGAAAAGAAGAGGTTCATGAATTTAACTTTGCAGGCTCCAGAACAGGCGTCAGAAAGCGT
GCTGCCAAATACGGATGTCATTTAATCCTGAAACTCTTAGAACAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.183

100

0.892
  cinA Streptococcus mitis NCTC 12261

46.651

100

0.469
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus mitis SK321

46.172

100

0.464
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus mutans UA159

46.489

99.279

0.462
  cinA Streptococcus suis isolate S10

42.287

90.385

0.382