Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RI196_RS10390 Genome accession   NZ_CP134501
Coordinates   2161765..2162775 (-) Length   336 a.a.
NCBI ID   WP_063386751.1    Uniprot ID   -
Organism   Aeribacillus composti strain HB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2156765..2167775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI196_RS10375 (RI196_10375) spoVS 2158641..2158901 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  RI196_RS10380 (RI196_10380) - 2159080..2159874 (-) 795 WP_063386731.1 TIGR00282 family metallophosphoesterase -
  RI196_RS10385 (RI196_10385) rny 2159957..2161516 (-) 1560 WP_063386730.1 ribonuclease Y -
  RI196_RS10390 (RI196_10390) recA 2161765..2162775 (-) 1011 WP_063386751.1 recombinase RecA Machinery gene
  RI196_RS10395 (RI196_10395) cinA 2162942..2164195 (-) 1254 WP_094246518.1 competence/damage-inducible protein A Machinery gene
  RI196_RS10400 (RI196_10400) pgsA 2164220..2164798 (-) 579 WP_094246009.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RI196_RS10405 (RI196_10405) - 2164853..2165740 (-) 888 WP_094246010.1 RodZ domain-containing protein -
  RI196_RS10410 (RI196_10410) - 2165756..2166550 (-) 795 WP_066246441.1 YmfK family protein -
  RI196_RS10415 (RI196_10415) - 2166697..2166954 (-) 258 WP_063386726.1 DUF3243 domain-containing protein -
  RI196_RS10420 (RI196_10420) ymfI 2167028..2167741 (-) 714 WP_232515766.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 36488.53 Da        Isoelectric Point: 4.8232

>NTDB_id=880619 RI196_RS10390 WP_063386751.1 2161765..2162775(-) (recA) [Aeribacillus composti strain HB-1]
MALKQIEKQFGKGSIMKLGEQAERKVSTVPSGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAEVQALGGQAA
FIDAEHALDPVYAQNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARLM
SQALRKLSGAISKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDMVGNKTKIKVVKNKV
APPFRTAEVDIMYGEGISKEGEIIDLGTELDIIQKSGSWYSYQEERLGQGRENAKQFLRENPDIRDAIQQEIRKAYGLET
NEPVQEGQETFELLDE

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=880619 RI196_RS10390 WP_063386751.1 2161765..2162775(-) (recA) [Aeribacillus composti strain HB-1]
ATGGCGTTAAAACAGATTGAAAAACAATTCGGAAAAGGTTCGATAATGAAGCTTGGAGAACAGGCTGAGCGAAAAGTTTC
AACAGTTCCAAGCGGATCGCTGGCATTGGATGCAGCTCTTGGCGTCGGCGGATATCCTCGAGGTCGGATTATTGAAATAT
ATGGACCGGAAAGCTCCGGTAAAACGACAGTGGCCCTTCATGCCATTGCTGAAGTTCAAGCTCTAGGCGGGCAAGCAGCG
TTCATCGATGCGGAACATGCGCTCGACCCTGTCTATGCGCAAAATTTAGGTGTTAATATTGATGAACTGCTTTTGTCGCA
GCCCGATACCGGCGAGCAGGCTCTTGAGATTGCAGAAGCTCTCGTTCGCAGCGGTGCAGTCGACATCATTGTCATTGACT
CGGTCGCAGCACTCGTCCCAAAAGCGGAAATTGAAGGCGAAATGGGCGATGCGCATGTCGGATTGCAGGCGCGTCTTATG
TCACAAGCGCTTCGGAAGCTTTCAGGAGCCATTAGCAAGTCGAAAACCATTGCGATTTTTATTAATCAAATAAGGGAAAA
AGTGGGCGTCATGTTCGGAAATCCCGAGACAACTCCAGGGGGACGCGCGCTGAAATTTTACTCATCTGTCCGCCTTGAAG
TGCGCAGAGCTGAACAGCTGAAACAAGGAAATGATATGGTAGGAAACAAAACGAAAATTAAAGTTGTCAAAAACAAAGTA
GCGCCTCCTTTTAGAACGGCAGAAGTTGATATCATGTACGGGGAAGGGATTTCAAAAGAAGGAGAAATCATCGACCTGGG
AACGGAATTGGATATTATACAAAAAAGCGGTTCGTGGTATTCTTACCAAGAGGAGCGTTTAGGACAGGGAAGAGAAAATG
CAAAGCAATTTTTGCGCGAAAATCCGGATATTCGCGATGCCATTCAGCAAGAAATTCGCAAGGCATATGGCCTTGAAACG
AATGAACCTGTGCAAGAGGGGCAGGAAACGTTCGAGCTTTTGGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(2-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.72

95.536

0.857
  recA Latilactobacillus sakei subsp. sakei 23K

73.156

100

0.738
  recA Streptococcus pneumoniae D39

69.322

100

0.699
  recA Streptococcus pneumoniae R6

69.322

100

0.699
  recA Streptococcus pneumoniae TIGR4

69.322

100

0.699
  recA Streptococcus pneumoniae Rx1

69.322

100

0.699
  recA Streptococcus mitis NCTC 12261

69.277

98.81

0.685
  recA Streptococcus mutans UA159

68.06

99.702

0.679
  recA Streptococcus mitis SK321

68.675

98.81

0.679
  recA Streptococcus pyogenes NZ131

69.375

95.238

0.661
  recA Lactococcus lactis subsp. cremoris KW2

68.536

95.536

0.655
  recA Ralstonia pseudosolanacearum GMI1000

67.732

93.155

0.631
  recA Neisseria gonorrhoeae strain FA1090

65.409

94.643

0.619
  recA Neisseria gonorrhoeae MS11

65.409

94.643

0.619
  recA Neisseria gonorrhoeae MS11

65.409

94.643

0.619
  recA Acinetobacter baumannii D1279779

61.721

100

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.89

94.94

0.616
  recA Glaesserella parasuis strain SC1401

64.062

95.238

0.61
  recA Helicobacter pylori 26695

62.769

96.726

0.607
  recA Helicobacter pylori strain NCTC11637

62.769

96.726

0.607
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.537

93.155

0.601
  recA Vibrio cholerae strain A1552

64.537

93.155

0.601
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.407

94.345

0.598
  recA Pseudomonas stutzeri DSM 10701

64.103

92.857

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.776

94.345

0.592
  recA Acinetobacter baylyi ADP1

63.578

93.155

0.592