Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RI196_RS10395 Genome accession   NZ_CP134501
Coordinates   2162942..2164195 (-) Length   417 a.a.
NCBI ID   WP_094246518.1    Uniprot ID   -
Organism   Aeribacillus composti strain HB-1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2157942..2169195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI196_RS10375 (RI196_10375) spoVS 2158641..2158901 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  RI196_RS10380 (RI196_10380) - 2159080..2159874 (-) 795 WP_063386731.1 TIGR00282 family metallophosphoesterase -
  RI196_RS10385 (RI196_10385) rny 2159957..2161516 (-) 1560 WP_063386730.1 ribonuclease Y -
  RI196_RS10390 (RI196_10390) recA 2161765..2162775 (-) 1011 WP_063386751.1 recombinase RecA Machinery gene
  RI196_RS10395 (RI196_10395) cinA 2162942..2164195 (-) 1254 WP_094246518.1 competence/damage-inducible protein A Machinery gene
  RI196_RS10400 (RI196_10400) pgsA 2164220..2164798 (-) 579 WP_094246009.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RI196_RS10405 (RI196_10405) - 2164853..2165740 (-) 888 WP_094246010.1 RodZ domain-containing protein -
  RI196_RS10410 (RI196_10410) - 2165756..2166550 (-) 795 WP_066246441.1 YmfK family protein -
  RI196_RS10415 (RI196_10415) - 2166697..2166954 (-) 258 WP_063386726.1 DUF3243 domain-containing protein -
  RI196_RS10420 (RI196_10420) ymfI 2167028..2167741 (-) 714 WP_232515766.1 elongation factor P 5-aminopentanone reductase -
  RI196_RS10425 (RI196_10425) yfmH 2167757..2169046 (-) 1290 WP_311066215.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 46153.02 Da        Isoelectric Point: 6.8306

>NTDB_id=880620 RI196_RS10395 WP_094246518.1 2162942..2164195(-) (cinA) [Aeribacillus composti strain HB-1]
MNAEIIAVGSELLLGQIANTNAQFISKKLAEIGVNVFYHTVVGDNAERLKHTIETAKKRSNCIIFTGGLGPTKDDLTKET
IARILNKRLVIDEAAMKNIEDFFKRTKRTMSENNRKQALVLEGSTVLPNHYGMAPGMALEANGITYLLMPGVPKEMKPMF
INYGVPFLQYHYGLKEKIISRVLRFFGIGESQLETDIEDLIDQQTNPTIAPLAKDGEVTLRLTAKHEDESTALKLIDETE
KKILSRVGRYFYGHGETSIQEQLMKLLKEKQYTISAAESLTGGLFSEQLTHFPGASNIVLGGIVCYTNEVKQHVLGVSEE
TLKTKGAVSSECAKEMAENIKKLTGSNIGISFTGVAGPDPSEGKEVGTVYIGIQIDDRPTAVFELHLSGTREGIRHRTAN
YGCYYVMNVIKEMENRL

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=880620 RI196_RS10395 WP_094246518.1 2162942..2164195(-) (cinA) [Aeribacillus composti strain HB-1]
GTGAATGCTGAAATTATTGCTGTCGGTTCAGAACTGTTGCTTGGACAGATCGCCAACACAAACGCCCAATTTATATCAAA
AAAGCTTGCTGAAATAGGTGTTAATGTTTTTTATCATACGGTCGTTGGAGACAATGCTGAGAGGCTCAAGCATACGATCG
AAACGGCAAAAAAACGGTCGAATTGCATCATTTTTACCGGCGGGCTCGGCCCGACAAAAGATGATTTGACGAAAGAAACG
ATTGCACGTATTTTGAATAAACGCCTCGTGATCGACGAGGCGGCGATGAAAAACATTGAGGATTTTTTTAAACGGACGAA
ACGGACAATGTCGGAAAACAATCGGAAACAAGCATTAGTTTTGGAAGGTTCTACTGTTTTGCCAAATCATTACGGAATGG
CGCCAGGAATGGCGTTAGAGGCGAACGGAATTACATATTTGCTAATGCCGGGCGTTCCGAAAGAAATGAAGCCGATGTTT
ATCAACTACGGTGTGCCGTTTTTGCAATATCATTACGGGTTAAAAGAAAAAATCATATCGCGTGTACTTCGTTTCTTTGG
CATCGGCGAATCTCAGCTTGAAACAGATATAGAGGATCTGATTGATCAGCAAACAAATCCGACCATCGCGCCGCTGGCAA
AAGACGGCGAAGTAACATTGCGCCTGACAGCAAAACATGAAGATGAGTCGACTGCGCTGAAGCTGATTGACGAAACAGAA
AAAAAGATTTTAAGCCGTGTTGGCCGATATTTTTATGGACACGGTGAAACTTCGATCCAAGAGCAGCTTATGAAGCTTCT
AAAAGAAAAGCAATATACTATTTCGGCTGCAGAAAGTTTGACGGGCGGTCTTTTTTCCGAACAGCTGACCCATTTTCCAG
GCGCTTCGAATATTGTGCTTGGAGGAATTGTCTGCTATACAAACGAAGTGAAGCAGCATGTTCTTGGCGTGTCGGAAGAA
ACGTTGAAAACAAAAGGAGCCGTTAGCTCTGAATGTGCGAAAGAAATGGCGGAAAATATAAAAAAATTGACCGGCAGCAA
TATCGGCATCAGCTTTACGGGAGTGGCAGGACCTGATCCTTCTGAAGGAAAAGAAGTTGGGACTGTCTATATCGGTATTC
AAATCGACGATCGGCCGACGGCAGTCTTTGAGCTTCATCTTTCCGGTACTCGGGAAGGGATCAGGCACAGAACGGCAAAT
TATGGCTGCTACTATGTAATGAATGTAATAAAGGAAATGGAAAACCGGTTATGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

64.878

98.321

0.638
  cinA Streptococcus mitis SK321

48.276

97.362

0.47
  cinA Streptococcus pneumoniae TIGR4

48.03

97.362

0.468
  cinA Streptococcus mitis NCTC 12261

47.783

97.362

0.465
  cinA Streptococcus pneumoniae Rx1

47.783

97.362

0.465
  cinA Streptococcus pneumoniae R6

47.783

97.362

0.465
  cinA Streptococcus pneumoniae D39

47.537

97.362

0.463
  cinA Streptococcus mutans UA159

46.394

99.76

0.463
  cinA Streptococcus suis isolate S10

42.667

89.928

0.384