Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RJW51_RS06815 Genome accession   NZ_CP134491
Coordinates   1335143..1336297 (+) Length   384 a.a.
NCBI ID   WP_024392836.1    Uniprot ID   A0A6L8MZ50
Organism   Streptococcus parasuis strain 1628469     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1330143..1341297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS06795 (RJW51_06780) mutL 1330316..1332253 (+) 1938 WP_172090041.1 DNA mismatch repair endonuclease MutL -
  RJW51_RS06800 (RJW51_06785) ruvA 1332292..1332882 (+) 591 WP_024392839.1 Holliday junction branch migration protein RuvA -
  RJW51_RS06805 (RJW51_06790) - 1333304..1333873 (+) 570 WP_172090040.1 DNA-3-methyladenine glycosylase I -
  RJW51_RS06810 (RJW51_06795) cinA 1333910..1335091 (+) 1182 WP_172090039.1 competence/damage-inducible protein A Machinery gene
  RJW51_RS06815 (RJW51_06800) recA 1335143..1336297 (+) 1155 WP_024392836.1 recombinase RecA Machinery gene
  RJW51_RS06820 (RJW51_06805) spx 1336511..1336909 (+) 399 WP_024392835.1 transcriptional regulator Spx -
  RJW51_RS06825 (RJW51_06810) - 1337019..1337285 (+) 267 WP_024392834.1 IreB family regulatory phosphoprotein -
  RJW51_RS06830 (RJW51_06815) ruvX 1337285..1337704 (+) 420 WP_079269042.1 Holliday junction resolvase RuvX -
  RJW51_RS06835 (RJW51_06820) - 1337716..1338036 (+) 321 WP_172090038.1 DUF1292 domain-containing protein -
  RJW51_RS06840 (RJW51_06825) - 1338467..1339015 (+) 549 WP_172090037.1 nucleotidyltransferase family protein -
  RJW51_RS06845 (RJW51_06830) comX/sigX 1339195..1339665 (+) 471 WP_024392830.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41207.92 Da        Isoelectric Point: 4.7868

>NTDB_id=880383 RJW51_RS06815 WP_024392836.1 1335143..1336297(+) (recA) [Streptococcus parasuis strain 1628469]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDQKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRIHYGLIEADEEQEVVEAEEKTIAVEDIQDVVLDLDGGIELED

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=880383 RJW51_RS06815 WP_024392836.1 1335143..1336297(+) (recA) [Streptococcus parasuis strain 1628469]
TTGGCTAAGAAACCAGGAAAAAAATTAGAAGATATTACAAAAAAATTTGGAGATGAACGTAAAAAAGCGCTGGATGATGC
ACTGAAATCTATTGAAAAAGATTTTGGTAAGGGAGCTGTCATGCGTCTCGGTGAACGTGCAGAGCAAAAGGTTCAAGTTA
TGAGCTCAGGTAGTCTGTCTATTGATATTGCGCTTGGGGCAGGTGGTTATCCCAAAGGGCGTATCATTGAAATTTATGGC
CCAGAAAGTTCAGGTAAGACAACAGTTGCTCTTCATGCTGTGGCTCAAGCACAGAAAGAAGGTGGAATTGCAGCCTTTAT
TGATGCAGAACATGCTTTGGATCCAGCCTATGCAGCAGCTCTAGGGGTAAATATTGATGAGTTACTCTTGTCACAGCCAG
ACTCAGGGGAACAAGGTCTTGAGATTGCAGGTAAGTTGATTGATTCTGGCGCGGTTGACTTAGTTGTCGTTGACTCTGTA
GCAGCCCTTGTACCTCGTGCAGAAATTGATGGTGATATTGGTGATAGTCACGTAGGTTTGCAAGCACGCATGATGAGTCA
GGCTATGCGTAAGTTGTCAGCTTCTATCAACAAAACCAAGACAATTGCTATCTTTATCAACCAGTTGCGTGAAAAAGTTG
GGGTGATGTTTGGTAACCCTGAAACAACACCTGGTGGACGTGCTCTTAAGTTCTATGCATCTGTTCGTATGGATGTCCGC
GGAAACACGCAGATCAAAGGTACTGGTGATCAAAAAGATCAAAACGTTGGTAAGGAAACCAAGGTCAAGATTGTGAAGAA
TAAGGTAGCTCCTCCGTTTAAGGAAGCTGTTGTTGAGATCATGTATGGAGAGGGAATTTCTCGCACAGGTGAATTGATCG
AGATCGGTAGCAACCTTGGTATTATTCAAAAAGCAGGAGCCTGGTATTCTTATAATGGAGAAAAAATCGGACAAGGCTCT
GAAAATGCTAAGAAATTCTTGGCAGACAATCCAGCAATCTTTGATGAAATCGACCGTAAGATTCGTATTCACTATGGTTT
GATTGAAGCAGATGAAGAACAAGAAGTAGTGGAAGCAGAAGAAAAGACGATTGCTGTTGAAGATATACAAGATGTTGTAC
TTGATCTAGATGGTGGCATTGAGTTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L8MZ50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

86.458

100

0.865
  recA Streptococcus pyogenes NZ131

85.677

100

0.857
  recA Streptococcus pneumoniae TIGR4

83.161

100

0.836
  recA Streptococcus pneumoniae Rx1

83.161

100

0.836
  recA Streptococcus pneumoniae D39

83.161

100

0.836
  recA Streptococcus pneumoniae R6

83.161

100

0.836
  recA Streptococcus mitis NCTC 12261

83.377

100

0.836
  recA Streptococcus mitis SK321

82.812

100

0.828
  recA Lactococcus lactis subsp. cremoris KW2

75.071

91.927

0.69
  recA Latilactobacillus sakei subsp. sakei 23K

67.262

87.5

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

68.693

85.677

0.589
  recA Neisseria gonorrhoeae MS11

61.934

86.198

0.534
  recA Neisseria gonorrhoeae strain FA1090

61.934

86.198

0.534
  recA Neisseria gonorrhoeae MS11

61.934

86.198

0.534
  recA Acinetobacter baylyi ADP1

57.91

92.188

0.534
  recA Acinetobacter baumannii D1279779

62.577

84.896

0.531
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

86.979

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.846

84.635

0.523
  recA Vibrio cholerae strain A1552

61.846

84.635

0.523
  recA Glaesserella parasuis strain SC1401

60.923

84.635

0.516
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

84.115

0.51
  recA Pseudomonas stutzeri DSM 10701

60

84.635

0.508
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

86.198

0.508
  recA Helicobacter pylori 26695

58.589

84.896

0.497
  recA Helicobacter pylori strain NCTC11637

58.589

84.896

0.497
  recA Ralstonia pseudosolanacearum GMI1000

60.252

82.552

0.497