Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RJW51_RS06810 Genome accession   NZ_CP134491
Coordinates   1333910..1335091 (+) Length   393 a.a.
NCBI ID   WP_172090039.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 1328910..1340091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS06795 (RJW51_06780) mutL 1330316..1332253 (+) 1938 WP_172090041.1 DNA mismatch repair endonuclease MutL -
  RJW51_RS06800 (RJW51_06785) ruvA 1332292..1332882 (+) 591 WP_024392839.1 Holliday junction branch migration protein RuvA -
  RJW51_RS06805 (RJW51_06790) - 1333304..1333873 (+) 570 WP_172090040.1 DNA-3-methyladenine glycosylase I -
  RJW51_RS06810 (RJW51_06795) cinA 1333910..1335091 (+) 1182 WP_172090039.1 competence/damage-inducible protein A Machinery gene
  RJW51_RS06815 (RJW51_06800) recA 1335143..1336297 (+) 1155 WP_024392836.1 recombinase RecA Machinery gene
  RJW51_RS06820 (RJW51_06805) spx 1336511..1336909 (+) 399 WP_024392835.1 transcriptional regulator Spx -
  RJW51_RS06825 (RJW51_06810) - 1337019..1337285 (+) 267 WP_024392834.1 IreB family regulatory phosphoprotein -
  RJW51_RS06830 (RJW51_06815) ruvX 1337285..1337704 (+) 420 WP_079269042.1 Holliday junction resolvase RuvX -
  RJW51_RS06835 (RJW51_06820) - 1337716..1338036 (+) 321 WP_172090038.1 DUF1292 domain-containing protein -
  RJW51_RS06840 (RJW51_06825) - 1338467..1339015 (+) 549 WP_172090037.1 nucleotidyltransferase family protein -
  RJW51_RS06845 (RJW51_06830) comX/sigX 1339195..1339665 (+) 471 WP_024392830.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 42789.54 Da        Isoelectric Point: 4.3842

>NTDB_id=880382 RJW51_RS06810 WP_172090039.1 1333910..1335091(+) (cinA) [Streptococcus parasuis strain 1628469]
MKAELIAVGTEILTGQIVNTNAQFLSEKCAELGIDVYFHTAVGDNENRLLSVLEVASQRSDLVFLCGGLGPTEDDLTKQT
LATFLGRNLVFDELAMAKLDRFFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
FSENLLPFLTQSQQQLYSRVLRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTLRLSTKADSQEEANVRLNQLEEE
ILQRDHLRDFFYAYGDDNSLVKTVATLLEEEKQSLGILEHGTGGLLQAELSLALAGQPYYSGGKIIGQLGTESGGLSEEA
SRIREELQADLGLVVSVAVKPESTVDNVLAKVYLALASTSGISKKEVDLGGYSWQYLRQLACLQALDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=880382 RJW51_RS06810 WP_172090039.1 1333910..1335091(+) (cinA) [Streptococcus parasuis strain 1628469]
ATGAAAGCAGAACTAATCGCCGTTGGGACGGAGATTTTGACAGGCCAAATCGTTAATACCAATGCTCAGTTCCTTTCGGA
GAAATGTGCAGAGCTGGGAATTGATGTTTATTTCCACACAGCTGTTGGAGATAATGAAAACAGGCTTCTGTCTGTACTGG
AAGTAGCCAGTCAGCGGAGCGACTTGGTCTTTCTCTGTGGAGGACTTGGTCCAACTGAGGATGACTTGACCAAGCAGACC
CTGGCGACCTTCTTAGGTAGAAATCTTGTGTTTGATGAGTTGGCTATGGCAAAATTAGACCGTTTCTTTGCCAGTCGACC
AGGTCGTGTTCGCACACCTAATAATGAGCGTCAAGCACAGATTGTAGAGGGAAGTCAGGCGCTACAGAACCCAGCTGGTT
TAGCTGTTGGTGGTATGATTGAGCAAGATGGTGTGACCTATATTGTTTTGCCCGGACCACCAAGTGAACTCAAGGCCATG
TTTTCTGAGAATCTGTTACCATTTTTGACTCAATCTCAGCAGCAACTTTACTCGCGTGTCCTACGCTTTTTTGGAATAGG
TGAAAGCCAGTTGGTGACTGTTTTAGCGGATTTGATCGACAAGCAGACAGACCCGACTCTTGCGCCTTATGCAAAAGTTG
GAGAGGTGACGCTTCGTTTATCTACGAAGGCAGATAGTCAGGAAGAAGCGAACGTGCGTTTGAATCAGTTGGAAGAAGAG
ATATTACAACGTGACCATTTGAGAGATTTTTTCTATGCATATGGGGATGATAATAGTTTGGTTAAAACCGTAGCGACTCT
TTTAGAGGAAGAGAAACAATCTTTGGGCATCCTAGAGCATGGAACAGGTGGTTTATTACAAGCAGAATTGAGTCTGGCTT
TGGCTGGTCAGCCGTATTATAGCGGAGGAAAAATCATCGGTCAGCTAGGGACAGAATCGGGCGGGTTATCAGAAGAAGCA
AGTCGTATTCGAGAGGAACTACAAGCTGATTTAGGGCTAGTTGTGTCGGTGGCAGTCAAACCAGAATCAACAGTAGACAA
CGTACTTGCTAAAGTATACCTAGCCTTGGCCAGTACCTCGGGTATTTCCAAAAAAGAGGTAGATTTAGGAGGTTATTCAT
GGCAATACCTTCGTCAACTTGCTTGTTTACAGGCGTTAGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

88.041

100

0.88
  cinA Streptococcus mitis SK321

55.529

100

0.588
  cinA Streptococcus pneumoniae TIGR4

55.288

100

0.585
  cinA Streptococcus mitis NCTC 12261

55.288

100

0.585
  cinA Streptococcus pneumoniae Rx1

55.288

100

0.585
  cinA Streptococcus pneumoniae R6

55.288

100

0.585
  cinA Streptococcus pneumoniae D39

55.048

100

0.583
  cinA Streptococcus mutans UA159

55.231

100

0.578
  cinA Bacillus subtilis subsp. subtilis str. 168

46.906

78.117

0.366