Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RJD40_RS12980 Genome accession   NZ_CP134280
Coordinates   2876234..2877274 (-) Length   346 a.a.
NCBI ID   WP_005593985.1    Uniprot ID   A0A1B1NRY3
Organism   Vibrio scophthalmi strain 21FBVib0106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2871234..2882274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD40_RS12965 (RJD40_12965) csrA 2871675..2871872 (-) 198 WP_005593989.1 carbon storage regulator CsrA -
  RJD40_RS12970 (RJD40_12970) - 2871949..2873139 (-) 1191 WP_065430950.1 aspartate kinase -
  RJD40_RS12975 (RJD40_12975) alaS 2873291..2875873 (-) 2583 WP_005593987.1 alanine--tRNA ligase -
  RJD40_RS12980 (RJD40_12980) recA 2876234..2877274 (-) 1041 WP_005593985.1 recombinase RecA Machinery gene
  RJD40_RS12985 (RJD40_12985) pncC 2877489..2877977 (-) 489 WP_418113552.1 nicotinamide-nucleotide amidase -
  RJD40_RS12990 (RJD40_12990) mutS 2878062..2880629 (+) 2568 WP_418113553.1 DNA mismatch repair protein MutS -
  RJD40_RS12995 (RJD40_12995) pilA 2880892..2881350 (+) 459 WP_065430953.1 pilin Machinery gene

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37355.80 Da        Isoelectric Point: 4.9594

>NTDB_id=879648 RJD40_RS12980 WP_005593985.1 2876234..2877274(-) (recA) [Vibrio scophthalmi strain 21FBVib0106]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGQGFNREGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACKYLKENTEAAQTIDS
KLREMLLTPAQPEEPEVGEMPQEEEF

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=879648 RJD40_RS12980 WP_005593985.1 2876234..2877274(-) (recA) [Vibrio scophthalmi strain 21FBVib0106]
ATGGACGAGAACAAACAGAAGGCGCTCGCCGCTGCGCTAGGTCAGATTGAAAAGCAATTTGGTAAAGGCTCAATCATGCG
CCTTGGTGATAACCGTACAATGGATGTTGAAACCATCTCTACTGGTTCACTTTCTCTAGATATCGCATTGGGTGCTGGTG
GCTTACCAATGGGTCGTATCGTTGAAGTTTACGGTCCAGAATCTTCAGGTAAGACGACGTTAACACTAGAACTGATTGCG
GCTGCGCAACGTGTAGGTAAAACCTGTGCGTTTATTGATGCTGAGCACGCACTTGATCCTATCTATGCGAAGAAGCTAGG
TGTTGATATCGATGCTCTGTTAGTTTCTCAGCCTGATACGGGTGAGCAAGCGCTAGAAATCTGTGATGCACTTGCACGTT
CAGGTGCGATTGATGTTTTGGTTGTCGATTCAGTAGCAGCTCTAACACCAAAAGCAGAAATCGAAGGTGAGATGGGCGAC
AGCCACATGGGTCTGCAAGCTCGTATGCTTTCTCAAGCGATGCGTAAGCTAACCGGTAACCTTAAGCAGTCAAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACAACCGGTGGTAACGCGC
TGAAATTCTACGCTTCTGTTCGTCTTGATATCCGTCGTACGGGTTCGATCAAAGATGGTGACGAAGTGGTGGGTAACGAA
ACACGCATTAAAGTGGTTAAGAACAAGATCGCAGCACCATTTAAACAAGCTGAAACACAGATTCTTTACGGCCAAGGCTT
TAACCGTGAAGGTGAGTTGGTTGACCTAGGTGTAAAACACAAGCTGATTGAAAAAGCGGGTGCATGGTACAGCTACAATG
GTGACAAAATCGGCCAAGGTAAAGCGAACGCGTGTAAGTACCTAAAAGAGAATACTGAAGCGGCGCAAACCATCGATAGC
AAACTACGTGAAATGCTATTGACCCCAGCTCAACCAGAAGAGCCAGAAGTTGGCGAAATGCCACAAGAAGAAGAGTTCTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1NRY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

87.252

100

0.89
  recA Vibrio cholerae O1 biovar El Tor strain E7946

87.252

100

0.89
  recA Pseudomonas stutzeri DSM 10701

72.941

98.266

0.717
  recA Acinetobacter baylyi ADP1

70.809

100

0.708
  recA Acinetobacter baumannii D1279779

74.39

94.798

0.705
  recA Neisseria gonorrhoeae MS11

67.049

100

0.676
  recA Neisseria gonorrhoeae MS11

67.049

100

0.676
  recA Neisseria gonorrhoeae strain FA1090

67.049

100

0.676
  recA Glaesserella parasuis strain SC1401

70.679

93.642

0.662
  recA Ralstonia pseudosolanacearum GMI1000

70.476

91.04

0.642
  recA Helicobacter pylori 26695

59.706

98.266

0.587
  recA Helicobacter pylori strain NCTC11637

59.412

98.266

0.584
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.009

92.197

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

58.309

99.133

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.775

0.578
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.121

95.665

0.575
  recA Streptococcus mutans UA159

60.923

93.931

0.572
  recA Streptococcus pneumoniae D39

61.3

93.353

0.572
  recA Streptococcus pneumoniae Rx1

61.3

93.353

0.572
  recA Streptococcus pneumoniae R6

61.3

93.353

0.572
  recA Streptococcus pneumoniae TIGR4

61.3

93.353

0.572
  recA Streptococcus mitis NCTC 12261

60.991

93.353

0.569
  recA Streptococcus mitis SK321

60.991

93.353

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

92.775

0.569
  recA Streptococcus pyogenes NZ131

60.615

93.931

0.569
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.353

0.555