Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RE409_RS09165 Genome accession   NZ_CP133763
Coordinates   1897677..1898717 (+) Length   346 a.a.
NCBI ID   WP_053345392.1    Uniprot ID   -
Organism   Peribacillus sp. R9-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1892677..1903717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE409_RS09140 (RE409_09145) - 1893106..1893363 (+) 258 WP_201181379.1 DUF3243 domain-containing protein -
  RE409_RS09145 (RE409_09150) - 1893605..1894396 (+) 792 WP_201181378.1 DUF3388 domain-containing protein -
  RE409_RS09150 (RE409_09155) - 1894405..1895310 (+) 906 WP_309558836.1 RodZ domain-containing protein -
  RE409_RS09155 (RE409_09160) pgsA 1895491..1896075 (+) 585 WP_053345391.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RE409_RS09160 (RE409_09165) cinA 1896097..1897329 (+) 1233 WP_201181375.1 competence/damage-inducible protein A Machinery gene
  RE409_RS09165 (RE409_09170) recA 1897677..1898717 (+) 1041 WP_053345392.1 recombinase RecA Machinery gene
  RE409_RS09170 (RE409_09175) rny 1899083..1900642 (+) 1560 WP_053345393.1 ribonuclease Y -
  RE409_RS09175 (RE409_09180) - 1900806..1901603 (+) 798 WP_201181374.1 TIGR00282 family metallophosphoesterase -
  RE409_RS09180 (RE409_09185) spoVS 1901786..1902046 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -
  RE409_RS09185 (RE409_09190) - 1902182..1903102 (+) 921 WP_309558837.1 dipeptidase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37854.95 Da        Isoelectric Point: 4.7334

>NTDB_id=876514 RE409_RS09165 WP_053345392.1 1897677..1898717(+) (recA) [Peribacillus sp. R9-11]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQSDRRISTISSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQKTGGTAAFIDAEHALDPAYSEKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARMMSQALRKLSGAINKSNTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNEIVGNKT
KIKIVKNKVAPPFRQAEVDIMYGQGISQEGEIIDMGADLDIVLKSGSWYSYNEERVGQGRENAKMFLKENQDIALEISQK
IRDHYNLDGEHELPEETEEEHFELLD

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=876514 RE409_RS09165 WP_053345392.1 1897677..1898717(+) (recA) [Peribacillus sp. R9-11]
GTGAGTGATCGTCAAGCGGCTTTAGATATGGCGTTAAAACAAATTGAAAAACAATTTGGTAAAGGTTCTATTATGAAACT
TGGAGAACAGTCTGATCGAAGAATCTCAACGATTTCAAGCGGTTCTTTAGCATTGGACGTAGCATTGGGAGTAGGCGGAT
ACCCAAGAGGTCGGGTCATTGAGATATACGGACCTGAAAGCTCAGGTAAAACGACTGTTGCATTGCATGCAATTGCAGAA
GTACAAAAGACTGGAGGCACGGCTGCATTCATTGATGCTGAGCATGCTTTAGATCCAGCATATTCAGAAAAACTTGGTGT
GAATATTGATGAGTTACTGCTTTCTCAGCCTGATACGGGTGAACAAGCACTTGAGATTGCTGAGGCGTTAGTGCGAAGCG
GCGCGGTAGATATCATTGTTATCGACTCCGTAGCGGCTCTTGTTCCAAAAGCTGAAATCGAAGGTGAAATGGGAGATTCC
CATATGGGTCTTCAAGCCCGGATGATGTCACAGGCGCTTAGAAAGCTGTCTGGTGCCATTAATAAATCAAATACCATTGC
TATATTCATTAACCAAATCCGTGAAAAAATCGGGGTTATGTTCGGGAATCCAGAAACGACTCCAGGTGGCCGTGCATTGA
AATTCTATTCAACTGTTCGCCTTGAAGTACGTCGTGCTGAACAATTGAAACAAGGTAATGAAATTGTCGGTAATAAAACC
AAAATTAAAATCGTAAAAAATAAGGTAGCTCCCCCATTCCGTCAAGCAGAAGTCGACATTATGTATGGTCAAGGGATTTC
TCAGGAAGGTGAAATCATTGATATGGGTGCAGATCTTGATATTGTCCTTAAAAGCGGCTCTTGGTATTCATACAATGAAG
AGCGTGTCGGACAAGGACGGGAAAATGCGAAAATGTTCTTGAAAGAAAATCAGGATATTGCTCTGGAAATTTCACAGAAA
ATCAGAGATCATTATAACCTTGATGGAGAGCATGAACTACCAGAAGAGACAGAAGAGGAACATTTTGAATTACTTGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.976

94.798

0.815
  recA Latilactobacillus sakei subsp. sakei 23K

72.046

100

0.723
  recA Streptococcus pneumoniae D39

65.706

100

0.659
  recA Streptococcus pneumoniae Rx1

65.706

100

0.659
  recA Streptococcus pneumoniae R6

65.706

100

0.659
  recA Streptococcus pneumoniae TIGR4

65.706

100

0.659
  recA Streptococcus mitis NCTC 12261

66.279

99.422

0.659
  recA Streptococcus mutans UA159

64.672

100

0.656
  recA Streptococcus mitis SK321

65.598

99.133

0.65
  recA Ralstonia pseudosolanacearum GMI1000

67.378

94.798

0.639
  recA Streptococcus pyogenes NZ131

66.972

94.509

0.633
  recA Neisseria gonorrhoeae MS11

64.118

98.266

0.63
  recA Neisseria gonorrhoeae MS11

64.118

98.266

0.63
  recA Neisseria gonorrhoeae strain FA1090

64.118

98.266

0.63
  recA Lactococcus lactis subsp. cremoris KW2

64.583

97.11

0.627
  recA Vibrio cholerae strain A1552

66.355

92.775

0.616
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.355

92.775

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.242

97.977

0.61
  recA Acinetobacter baumannii D1279779

61.224

99.133

0.607
  recA Helicobacter pylori 26695

61.471

98.266

0.604
  recA Helicobacter pylori strain NCTC11637

61.471

98.266

0.604
  recA Acinetobacter baylyi ADP1

61.176

98.266

0.601
  recA Pseudomonas stutzeri DSM 10701

63.75

92.486

0.59
  recA Glaesserella parasuis strain SC1401

63.75

92.486

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

94.509

0.587
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

93.353

0.578