Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RE409_RS09160 Genome accession   NZ_CP133763
Coordinates   1896097..1897329 (+) Length   410 a.a.
NCBI ID   WP_201181375.1    Uniprot ID   -
Organism   Peribacillus sp. R9-11     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1891097..1902329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE409_RS09135 (RE409_09140) ymfI 1892300..1893025 (+) 726 WP_201181380.1 elongation factor P 5-aminopentanone reductase -
  RE409_RS09140 (RE409_09145) - 1893106..1893363 (+) 258 WP_201181379.1 DUF3243 domain-containing protein -
  RE409_RS09145 (RE409_09150) - 1893605..1894396 (+) 792 WP_201181378.1 DUF3388 domain-containing protein -
  RE409_RS09150 (RE409_09155) - 1894405..1895310 (+) 906 WP_309558836.1 RodZ domain-containing protein -
  RE409_RS09155 (RE409_09160) pgsA 1895491..1896075 (+) 585 WP_053345391.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RE409_RS09160 (RE409_09165) cinA 1896097..1897329 (+) 1233 WP_201181375.1 competence/damage-inducible protein A Machinery gene
  RE409_RS09165 (RE409_09170) recA 1897677..1898717 (+) 1041 WP_053345392.1 recombinase RecA Machinery gene
  RE409_RS09170 (RE409_09175) rny 1899083..1900642 (+) 1560 WP_053345393.1 ribonuclease Y -
  RE409_RS09175 (RE409_09180) - 1900806..1901603 (+) 798 WP_201181374.1 TIGR00282 family metallophosphoesterase -
  RE409_RS09180 (RE409_09185) spoVS 1901786..1902046 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44823.04 Da        Isoelectric Point: 4.8973

>NTDB_id=876513 RE409_RS09160 WP_201181375.1 1896097..1897329(+) (cinA) [Peribacillus sp. R9-11]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGVNVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFEKRGRTMTENNKKQALVLEGSEVLANDHGMAPGMILAKSGITYMLLPGPPSEMEPMF
LSYGYESIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKDSSKEKCEELILEAE
KEILNRVGKFYYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGIVSYTNDAKSNVLGISDA
TISKNGVVSGECAMEMASNAREKFDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGDTHFKELSLSGSRAQIRVRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=876513 RE409_RS09160 WP_201181375.1 1896097..1897329(+) (cinA) [Peribacillus sp. R9-11]
ATGGATGCAGAAATCATTGCAGTAGGCTCTGAACTTCTTTTGGGACAAATTAATAACACAAATGGAAGATTTTTATCACA
ACAGTTTGCCGAAATGGGTGTCAATGTTTTTTACCATACTGTCGTCGGAGATAATGACCGACGATTACAACAAGCCATAG
AAATCGCAGAATCCCGGGCAAACTTGATTGTATTTACCGGTGGACTTGGTCCTACTAAAGATGATTTAACGAAGGAAACG
ATCGCTCGCCATATAGGAAAAAAACTCGTTTTTAATGATGAAGCACTTCAATCCATTGAAGCGTACTTTGAAAAACGCGG
CCGGACGATGACGGAGAACAACAAAAAGCAGGCTCTCGTCTTAGAAGGCAGCGAGGTCTTGGCAAACGATCATGGCATGG
CTCCGGGGATGATCTTGGCGAAATCCGGAATCACGTATATGTTGCTTCCTGGTCCTCCGAGTGAAATGGAACCAATGTTT
TTAAGCTATGGTTATGAATCGATTATGAATAAACTTGAAAAGCATGAACGGATCGACTCCAAGGTTCTTCGGTTTTACGG
GATAGGGGAAGCTGAACTGGAAACAGTGATTGAAGATCTTCTTGTCAATCAAACGAATCCCACAATCGCTCCACTGGCTG
CTGAAGGGGAAGTAACGTTAAGGATTACCGCTAAAGACTCTTCTAAAGAAAAATGTGAGGAGCTTATTTTAGAAGCGGAA
AAAGAAATTTTAAACAGGGTCGGCAAGTTTTATTATGGAAGTGATAATACTTCGCTCATAAAAGAACTTGTTAAAGAATT
AACGGTCCGAAAGCTTTCAATAGCGGCAGCGGAAAGCTTGACCGGCGGTATGTTTCAAGAGCAACTTACAACGATACCAG
GCGCCGGAAAAGTGTTCAAGGGTGGTATTGTCAGTTATACAAATGATGCGAAGTCGAATGTTTTGGGCATCAGTGACGCG
ACAATCTCGAAAAATGGCGTAGTCAGTGGTGAGTGTGCAATGGAAATGGCTTCTAATGCCCGGGAAAAGTTCGATGCGGA
TGTAGGTATCAGTTTTACGGGTGTTGCAGGGCCTGATGAACAAGAAGGCAAGCCAGTAGGTACGGTCTTCATTGGAATTT
CTTACCGTGATGGAGACACTCACTTTAAAGAATTGAGTTTATCTGGAAGCAGGGCGCAAATCCGTGTTCGTAGCGTGAAG
TACGGCTGTCATTATTTATTAAGAGACTTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.578

99.512

0.583
  cinA Streptococcus mitis SK321

45.238

100

0.463
  cinA Streptococcus pneumoniae TIGR4

45.238

100

0.463
  cinA Streptococcus mitis NCTC 12261

45

100

0.461
  cinA Streptococcus pneumoniae Rx1

44.762

100

0.459
  cinA Streptococcus pneumoniae R6

44.762

100

0.459
  cinA Streptococcus pneumoniae D39

44.524

100

0.456
  cinA Streptococcus mutans UA159

43.301

100

0.441
  cinA Streptococcus suis isolate S10

38.847

97.317

0.378