Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RFN66_RS10335 Genome accession   NZ_CP133705
Coordinates   1973210..1974256 (+) Length   348 a.a.
NCBI ID   WP_020451456.1    Uniprot ID   A0AAW6K814
Organism   Bacillus paralicheniformis strain CP47     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1968210..1979256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS10310 (RFN66_10310) - 1968907..1969164 (+) 258 WP_020451452.1 DUF3243 domain-containing protein -
  RFN66_RS10315 (RFN66_10315) - 1969412..1970203 (+) 792 WP_003181917.1 YmfK family protein -
  RFN66_RS10320 (RFN66_10320) - 1970221..1971123 (+) 903 WP_020451454.1 RodZ domain-containing protein -
  RFN66_RS10325 (RFN66_10325) pgsA 1971190..1971771 (+) 582 WP_145624305.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RFN66_RS10330 (RFN66_10330) cinA 1971791..1973041 (+) 1251 WP_025811434.1 competence/damage-inducible protein A Machinery gene
  RFN66_RS10335 (RFN66_10335) recA 1973210..1974256 (+) 1047 WP_020451456.1 recombinase RecA Machinery gene
  RFN66_RS10340 (RFN66_10340) rny 1974598..1976157 (+) 1560 WP_020451457.1 ribonuclease Y -
  RFN66_RS10345 (RFN66_10345) - 1976244..1977041 (+) 798 WP_105980943.1 TIGR00282 family metallophosphoesterase -
  RFN66_RS10350 (RFN66_10350) spoVS 1977243..1977503 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  RFN66_RS10355 (RFN66_10355) - 1977609..1978529 (+) 921 WP_020451459.1 dipeptidase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37792.94 Da        Isoelectric Point: 4.7661

>NTDB_id=875908 RFN66_RS10335 WP_020451456.1 1973210..1974256(+) (recA) [Bacillus paralicheniformis strain CP47]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTETRISTVPSGSLALDTALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTGGVAPAQEDEAQAQEELEF

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=875908 RFN66_RS10335 WP_020451456.1 1973210..1974256(+) (recA) [Bacillus paralicheniformis strain CP47]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCGCTTAAACAAATAGAAAAGCAGTTTGGTAAAGGTTCGATTATGAAACT
CGGCGAACAAACTGAAACGAGAATTTCAACAGTTCCGAGCGGTTCTTTAGCGCTCGACACGGCTCTTGGAGTGGGCGGAT
ACCCGCGCGGCCGGATTATTGAAGTATACGGGCCTGAAAGCTCCGGTAAAACGACGGTGGCGCTTCATGCGATTGCCGAA
GTTCAGCAGCAGGGCGGACAGGCGGCGTTCATCGACGCCGAGCACGCGCTCGACCCCGTCTATGCACAAAAGCTGGGCGT
CAACATTGATGAGCTTTTGCTGTCACAGCCTGATACGGGCGAGCAGGCGCTTGAAATCGCCGAAGCTCTTGTCAGAAGCG
GAGCGGTGGATATCGTTGTCATCGACTCTGTGGCAGCGCTTGTGCCGAAAGCTGAAATCGAAGGAGATATGGGGGATTCC
CACGTCGGTTTGCAGGCCAGACTGATGTCTCAAGCGCTTCGTAAGCTTTCCGGAGCGATCAATAAATCGAAGACCATCGC
GATCTTTATTAACCAGATTCGTGAAAAAGTCGGCGTCATGTTTGGAAATCCTGAGACGACGCCAGGCGGAAGAGCGCTGA
AATTCTACTCTTCTGTCCGCCTTGAAGTGCGCCGCGCAGAGCAGCTGAAACAAGGCAACGATGTCATGGGGAACAAGACG
AAAATCAAAGTCGTGAAAAACAAAGTGGCCCCTCCATTCCGGACTGCCGAAGTGGACATTATGTACGGGGAAGGGATTTC
AAAAGAAGGGGAAATCATCGATCTCGGAACAGAGCTTGACATCGTTCAGAAGAGCGGTGCATGGTACTCTTATCAGGAGG
AACGTCTTGGTCAAGGCCGTGAAAATGCCAAACAGTTCCTGAAAGAAAACAAGGACATCCTTTTGATGATTCAAGAGCAG
ATCCGGGAGCACTACGGTTTGGACACTGGAGGCGTTGCTCCTGCTCAGGAAGACGAGGCCCAAGCTCAAGAAGAACTCGA
ATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.988

95.402

0.925
  recA Latilactobacillus sakei subsp. sakei 23K

74.769

93.391

0.698
  recA Streptococcus mitis NCTC 12261

68.023

98.851

0.672
  recA Streptococcus pneumoniae TIGR4

67.147

99.713

0.67
  recA Streptococcus pneumoniae Rx1

67.147

99.713

0.67
  recA Streptococcus pneumoniae D39

67.147

99.713

0.67
  recA Streptococcus pneumoniae R6

67.147

99.713

0.67
  recA Streptococcus mitis SK321

67.638

98.563

0.667
  recA Streptococcus mutans UA159

68.997

94.54

0.652
  recA Streptococcus pyogenes NZ131

68.293

94.253

0.644
  recA Lactococcus lactis subsp. cremoris KW2

66.667

94.828

0.632
  recA Ralstonia pseudosolanacearum GMI1000

65.951

93.678

0.618
  recA Neisseria gonorrhoeae strain FA1090

65.749

93.966

0.618
  recA Neisseria gonorrhoeae MS11

65.749

93.966

0.618
  recA Neisseria gonorrhoeae MS11

65.749

93.966

0.618
  recA Acinetobacter baumannii D1279779

60.983

99.425

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.059

97.701

0.606
  recA Helicobacter pylori 26695

64.615

93.391

0.603
  recA Helicobacter pylori strain NCTC11637

64.615

93.391

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

93.966

0.595
  recA Acinetobacter baylyi ADP1

60.174

98.851

0.595
  recA Glaesserella parasuis strain SC1401

59.884

98.851

0.592
  recA Pseudomonas stutzeri DSM 10701

60.234

98.276

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.241

0.592
  recA Vibrio cholerae strain A1552

64.174

92.241

0.592
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563