Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RFN66_RS10330 Genome accession   NZ_CP133705
Coordinates   1971791..1973041 (+) Length   416 a.a.
NCBI ID   WP_025811434.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CP47     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1966791..1978041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS10305 (RFN66_10305) ymfI 1968105..1968836 (+) 732 WP_020451451.1 elongation factor P 5-aminopentanone reductase -
  RFN66_RS10310 (RFN66_10310) - 1968907..1969164 (+) 258 WP_020451452.1 DUF3243 domain-containing protein -
  RFN66_RS10315 (RFN66_10315) - 1969412..1970203 (+) 792 WP_003181917.1 YmfK family protein -
  RFN66_RS10320 (RFN66_10320) - 1970221..1971123 (+) 903 WP_020451454.1 RodZ domain-containing protein -
  RFN66_RS10325 (RFN66_10325) pgsA 1971190..1971771 (+) 582 WP_145624305.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RFN66_RS10330 (RFN66_10330) cinA 1971791..1973041 (+) 1251 WP_025811434.1 competence/damage-inducible protein A Machinery gene
  RFN66_RS10335 (RFN66_10335) recA 1973210..1974256 (+) 1047 WP_020451456.1 recombinase RecA Machinery gene
  RFN66_RS10340 (RFN66_10340) rny 1974598..1976157 (+) 1560 WP_020451457.1 ribonuclease Y -
  RFN66_RS10345 (RFN66_10345) - 1976244..1977041 (+) 798 WP_105980943.1 TIGR00282 family metallophosphoesterase -
  RFN66_RS10350 (RFN66_10350) spoVS 1977243..1977503 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45632.01 Da        Isoelectric Point: 5.1633

>NTDB_id=875907 RFN66_RS10330 WP_025811434.1 1971791..1973041(+) (cinA) [Bacillus paralicheniformis strain CP47]
MKLERKAEIIAVGSELLLGQIANTNAQFISRHLAEIGINVFYHTAVGDNPERLKQVIQTAQKRSDFIIFSGGLGPTKDDL
TKETIAEVVGRPLKLDDEAFESIQDYFRKTNREMSPNNRKQALILEGSDVLPNRFGMAPGMLLEHESRFYMLLPGPPKEL
EPMFENEAKPLILEKLGSKEKIVSRVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHADSKETNRLL
KETEDLILERVGEFFYGYDDTSLAEELAKACRSKGMTLAAAESFTGGLFSTWLTEMSGASEYFKGGAVCYTNELKVSAAG
VAEDTLQRYGAVSAQCAKELAAGIRVKTGSDIGISFTGVAGPNTQEGHPAGKVFIGISVKDQAEEAFEFQFAGSRSAVRK
RSAKYGCHLLLKMMEK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=875907 RFN66_RS10330 WP_025811434.1 1971791..1973041(+) (cinA) [Bacillus paralicheniformis strain CP47]
ATGAAGTTGGAAAGAAAAGCGGAAATTATCGCTGTCGGTTCTGAGCTTCTGCTCGGACAAATCGCTAATACAAATGCTCA
GTTTATCAGCAGGCATTTGGCCGAAATCGGCATTAACGTCTTTTATCACACGGCGGTGGGAGATAACCCGGAACGCCTTA
AACAAGTCATTCAGACAGCTCAGAAAAGGTCTGACTTCATCATTTTTTCGGGAGGCCTCGGACCGACGAAAGACGATTTG
ACAAAAGAAACGATCGCTGAAGTTGTCGGGCGCCCTCTTAAGCTCGACGATGAAGCCTTCGAATCGATTCAGGATTACTT
CAGAAAAACGAACCGGGAGATGTCGCCGAACAACCGCAAACAGGCGTTGATCCTCGAAGGATCCGATGTTCTGCCGAACC
GCTTCGGGATGGCTCCGGGAATGCTGCTTGAGCATGAATCGCGCTTTTATATGCTCTTGCCGGGACCTCCGAAAGAGCTG
GAGCCGATGTTTGAAAACGAAGCGAAGCCGCTGATTTTGGAAAAGCTCGGCTCGAAGGAAAAGATCGTGTCAAGGGTGCT
GCGGTTCTTCGGCATCGGAGAATCCCAGCTTGAAACCGATTTGGAAGATCTCATCGATGCGCAGACTAATCCGACAATCG
CCCCGCTTGCGGCCGACGGGGAAGTCACGCTCAGGCTCACGGCAAAGCATGCGGATTCGAAGGAGACAAACCGCTTGTTA
AAAGAAACGGAAGACCTCATCCTGGAGCGGGTCGGAGAGTTCTTTTACGGGTATGATGATACATCTCTTGCAGAAGAGCT
TGCGAAAGCATGCAGGAGCAAGGGAATGACCTTGGCCGCTGCGGAAAGCTTTACAGGCGGGCTTTTTTCCACCTGGCTGA
CGGAAATGAGCGGCGCTTCCGAATATTTCAAAGGCGGCGCCGTCTGCTACACAAACGAATTGAAAGTTTCAGCGGCCGGC
GTTGCTGAAGACACGCTGCAGCGCTACGGTGCGGTCAGCGCGCAATGCGCAAAAGAGCTCGCCGCAGGCATCAGAGTCAA
AACAGGAAGCGATATCGGCATCAGCTTTACTGGAGTAGCCGGGCCGAATACGCAAGAAGGCCATCCGGCAGGAAAGGTGT
TTATCGGCATCTCCGTGAAGGACCAGGCTGAAGAAGCGTTCGAATTTCAGTTCGCCGGATCCAGGTCTGCGGTGCGAAAG
CGTTCTGCCAAATACGGCTGCCATCTGTTGCTGAAAATGATGGAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

76.683

100

0.767
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.474
  cinA Streptococcus mitis SK321

46.539

100

0.469
  cinA Streptococcus pneumoniae R6

46.539

100

0.469
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.469
  cinA Streptococcus mitis NCTC 12261

46.539

100

0.469
  cinA Streptococcus pneumoniae D39

46.301

100

0.466
  cinA Streptococcus mutans UA159

46.829

98.558

0.462
  cinA Streptococcus suis isolate S10

41.162

95.192

0.392