Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | RFN65_RS11725 | Genome accession | NZ_CP133703 |
| Coordinates | 2308125..2309171 (-) | Length | 348 a.a. |
| NCBI ID | WP_003245789.1 | Uniprot ID | A0A199WHQ8 |
| Organism | Bacillus subtilis strain CP35 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2285578..2310594 | 2308125..2309171 | within | 0 |
Gene organization within MGE regions
Location: 2285578..2310594
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RFN65_RS11610 (RFN65_11610) | - | 2285578..2286033 (-) | 456 | WP_396123279.1 | phage terminase small subunit P27 family | - |
| RFN65_RS11615 (RFN65_11615) | - | 2286415..2286789 (-) | 375 | WP_045384479.1 | HNH endonuclease signature motif containing protein | - |
| RFN65_RS11620 (RFN65_11620) | - | 2286786..2287202 (-) | 417 | WP_100506580.1 | hypothetical protein | - |
| RFN65_RS11625 (RFN65_11625) | - | 2287528..2288292 (-) | 765 | WP_100506579.1 | hypothetical protein | - |
| RFN65_RS11630 (RFN65_11630) | - | 2288959..2289297 (-) | 339 | WP_251217917.1 | hypothetical protein | - |
| RFN65_RS11635 (RFN65_11635) | - | 2289530..2290072 (-) | 543 | WP_100506578.1 | tyrosine-type recombinase/integrase | - |
| RFN65_RS11640 (RFN65_11640) | - | 2290072..2290452 (-) | 381 | WP_285840562.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| RFN65_RS11645 (RFN65_11645) | - | 2290754..2291503 (-) | 750 | WP_157799635.1 | hypothetical protein | - |
| RFN65_RS11650 (RFN65_11650) | - | 2291775..2292137 (+) | 363 | WP_100506576.1 | Ig-like domain-containing protein | - |
| RFN65_RS11655 (RFN65_11655) | - | 2292181..2292468 (-) | 288 | WP_100506575.1 | YrzE family protein | - |
| RFN65_RS11660 (RFN65_11660) | - | 2292652..2292977 (-) | 326 | Protein_2299 | VWA domain-containing protein | - |
| RFN65_RS11665 (RFN65_11665) | - | 2293020..2293217 (-) | 198 | WP_100506573.1 | XtrA/YqaO family protein | - |
| RFN65_RS11670 (RFN65_11670) | mutL | 2293596..2295479 (-) | 1884 | WP_100506572.1 | DNA mismatch repair endonuclease MutL | - |
| RFN65_RS11675 (RFN65_11675) | mutS | 2295495..2298071 (-) | 2577 | WP_033883742.1 | DNA mismatch repair protein MutS | - |
| RFN65_RS11680 (RFN65_11680) | cotE | 2298204..2298749 (-) | 546 | WP_003231833.1 | outer spore coat protein CotE | - |
| RFN65_RS11685 (RFN65_11685) | ricA | 2299011..2299442 (-) | 432 | WP_003231834.1 | regulatory iron-sulfur-containing complex subunit RicA | - |
| RFN65_RS11690 (RFN65_11690) | miaB | 2299444..2300973 (-) | 1530 | WP_015483238.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| RFN65_RS11695 (RFN65_11695) | kbl | 2301121..2302299 (-) | 1179 | WP_015383694.1 | glycine C-acetyltransferase | - |
| RFN65_RS11700 (RFN65_11700) | tdh | 2302312..2303355 (-) | 1044 | WP_015483237.1 | L-threonine 3-dehydrogenase | - |
| RFN65_RS11705 (RFN65_11705) | spoVS | 2303621..2303881 (-) | 261 | WP_003154135.1 | stage V sporulation protein SpoVS | - |
| RFN65_RS11710 (RFN65_11710) | ymdB | 2304081..2304875 (-) | 795 | WP_003245138.1 | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | - |
| RFN65_RS11715 (RFN65_11715) | rny | 2304944..2306506 (-) | 1563 | WP_003221010.1 | ribonuclease Y | - |
| RFN65_RS11720 (RFN65_11720) | pbpX | 2306782..2307957 (-) | 1176 | WP_063335370.1 | serine hydrolase | - |
| RFN65_RS11725 (RFN65_11725) | recA | 2308125..2309171 (-) | 1047 | WP_003245789.1 | recombinase RecA | Machinery gene |
| RFN65_RS11730 (RFN65_11730) | cinA | 2309344..2310594 (-) | 1251 | WP_003231847.1 | competence/damage-inducible protein A | Machinery gene |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 38059.21 Da Isoelectric Point: 4.7315
>NTDB_id=875838 RFN65_RS11725 WP_003245789.1 2308125..2309171(-) (recA) [Bacillus subtilis strain CP35]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVVQQQAEETQEELEFEE
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVVQQQAEETQEELEFEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=875838 RFN65_RS11725 WP_003245789.1 2308125..2309171(-) (recA) [Bacillus subtilis strain CP35]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACCAGAATTTCTACTGTCCCAAGCGGCTCCCTCGCCCTTGATACAGCACTGGGAATTGGCGGAT
ATCCGCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAA
GTTCAGCAGCAGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAAAAGCTCGGTGT
TAACATTGAAGAGCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCATTGGTTCGAAGCG
GGGCAGTTGACATTGTCGTTGTCGACTCTGTAGCCGCTCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCG
CATGTCGGCTTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGGAACCCGGAAACAACTCCTGGCGGCCGTGCGTTGA
AATTCTACTCTTCCGTGCGTCTTGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAGGTGGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATTTC
AAAAGAAGGCGAAATCATTGATCTAGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGTCAAGGCCGTGAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGATTCAGGAGCAA
ATTCGCGAACATTACGGCTTGGATAATAACGGAGTAGTGCAGCAGCAAGCTGAAGAGACACAAGAAGAACTCGAATTTGA
AGAATAA
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACCAGAATTTCTACTGTCCCAAGCGGCTCCCTCGCCCTTGATACAGCACTGGGAATTGGCGGAT
ATCCGCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAA
GTTCAGCAGCAGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAAAAGCTCGGTGT
TAACATTGAAGAGCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCATTGGTTCGAAGCG
GGGCAGTTGACATTGTCGTTGTCGACTCTGTAGCCGCTCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCG
CATGTCGGCTTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGGAACCCGGAAACAACTCCTGGCGGCCGTGCGTTGA
AATTCTACTCTTCCGTGCGTCTTGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAGGTGGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATTTC
AAAAGAAGGCGAAATCATTGATCTAGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGTCAAGGCCGTGAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGATTCAGGAGCAA
ATTCGCGAACATTACGGCTTGGATAATAACGGAGTAGTGCAGCAGCAAGCTGAAGAGACACAAGAAGAACTCGAATTTGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.