Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RFN60_RS09030 Genome accession   NZ_CP133653
Coordinates   1737167..1738213 (+) Length   348 a.a.
NCBI ID   WP_003245789.1    Uniprot ID   A0A199WHQ8
Organism   Bacillus subtilis strain CP38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1732167..1743213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS09000 (RFN60_09000) ymfI 1732176..1732904 (+) 729 WP_003244676.1 elongation factor P 5-aminopentanone reductase -
  RFN60_RS09005 (RFN60_09005) ymfJ 1732985..1733242 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  RFN60_RS09010 (RFN60_09010) - 1733371..1734162 (+) 792 WP_003220998.1 YmfK family protein -
  RFN60_RS09015 (RFN60_09015) rodZ 1734229..1735095 (+) 867 WP_202926476.1 RodZ family helix-turn-helix domain-containing protein -
  RFN60_RS09020 (RFN60_09020) pgsA 1735145..1735726 (+) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RFN60_RS09025 (RFN60_09025) cinA 1735744..1736994 (+) 1251 WP_069704104.1 competence/damage-inducible protein A Machinery gene
  RFN60_RS09030 (RFN60_09030) recA 1737167..1738213 (+) 1047 WP_003245789.1 recombinase RecA Machinery gene
  RFN60_RS09035 (RFN60_09035) pbpX 1738381..1739556 (+) 1176 WP_003245877.1 serine hydrolase -
  RFN60_RS09040 (RFN60_09040) rny 1739832..1741394 (+) 1563 WP_003221010.1 ribonuclease Y -
  RFN60_RS09045 (RFN60_09045) ymdB 1741463..1742257 (+) 795 WP_003245138.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  RFN60_RS09050 (RFN60_09050) spoVS 1742457..1742717 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38059.21 Da        Isoelectric Point: 4.7315

>NTDB_id=875569 RFN60_RS09030 WP_003245789.1 1737167..1738213(+) (recA) [Bacillus subtilis strain CP38]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVVQQQAEETQEELEFEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=875569 RFN60_RS09030 WP_003245789.1 1737167..1738213(+) (recA) [Bacillus subtilis strain CP38]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTACCAAGCGGCTCCCTCGCTCTTGATACAGCACTGGGAATTGGCGGAT
ATCCTCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAA
GTTCAGCAGCAGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAAAAGCTCGGTGT
TAACATCGAAGAGCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCATTGGTTCGAAGCG
GGGCAGTTGACATTGTCGTTGTCGACTCTGTAGCCGCTCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCG
CATGTCGGTTTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGTGTTATGTTCGGGAACCCGGAAACAACACCTGGCGGCCGTGCGTTGA
AATTCTATTCTTCCGTGCGTCTTGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAGGTGGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATTTC
AAAAGAAGGCGAAATCATTGATCTAGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGCGAACATTACGGCTTGGATAATAACGGAGTAGTGCAGCAGCAAGCTGAAGAGACACAAGAAGAACTCGAATTTGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WHQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  recA Latilactobacillus sakei subsp. sakei 23K

74.924

93.966

0.704
  recA Streptococcus pneumoniae D39

66.477

100

0.672
  recA Streptococcus pneumoniae R6

66.477

100

0.672
  recA Streptococcus pneumoniae TIGR4

66.477

100

0.672
  recA Streptococcus pneumoniae Rx1

66.477

100

0.672
  recA Streptococcus mutans UA159

66.092

100

0.661
  recA Streptococcus mitis SK321

65.994

99.713

0.658
  recA Streptococcus mitis NCTC 12261

68.788

94.828

0.652
  recA Streptococcus pyogenes NZ131

67.683

94.253

0.638
  recA Neisseria gonorrhoeae strain FA1090

63.584

99.425

0.632
  recA Neisseria gonorrhoeae MS11

63.584

99.425

0.632
  recA Neisseria gonorrhoeae MS11

63.584

99.425

0.632
  recA Lactococcus lactis subsp. cremoris KW2

65.758

94.828

0.624
  recA Helicobacter pylori 26695

63.081

98.851

0.624
  recA Helicobacter pylori strain NCTC11637

63.081

98.851

0.624
  recA Ralstonia pseudosolanacearum GMI1000

64.742

94.54

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.988

98.276

0.609
  recA Glaesserella parasuis strain SC1401

60.58

99.138

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

93.966

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.465

98.851

0.598
  recA Vibrio cholerae strain A1552

60.465

98.851

0.598
  recA Acinetobacter baumannii D1279779

61.243

97.126

0.595
  recA Pseudomonas stutzeri DSM 10701

62.813

91.954

0.578
  recA Acinetobacter baylyi ADP1

62.422

92.529

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563