Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RFN60_RS09025 Genome accession   NZ_CP133653
Coordinates   1735744..1736994 (+) Length   416 a.a.
NCBI ID   WP_069704104.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP38     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1730744..1741994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS08995 (RFN60_08995) yfmH 1730835..1732121 (+) 1287 WP_015252075.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  RFN60_RS09000 (RFN60_09000) ymfI 1732176..1732904 (+) 729 WP_003244676.1 elongation factor P 5-aminopentanone reductase -
  RFN60_RS09005 (RFN60_09005) ymfJ 1732985..1733242 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  RFN60_RS09010 (RFN60_09010) - 1733371..1734162 (+) 792 WP_003220998.1 YmfK family protein -
  RFN60_RS09015 (RFN60_09015) rodZ 1734229..1735095 (+) 867 WP_202926476.1 RodZ family helix-turn-helix domain-containing protein -
  RFN60_RS09020 (RFN60_09020) pgsA 1735145..1735726 (+) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RFN60_RS09025 (RFN60_09025) cinA 1735744..1736994 (+) 1251 WP_069704104.1 competence/damage-inducible protein A Machinery gene
  RFN60_RS09030 (RFN60_09030) recA 1737167..1738213 (+) 1047 WP_003245789.1 recombinase RecA Machinery gene
  RFN60_RS09035 (RFN60_09035) pbpX 1738381..1739556 (+) 1176 WP_003245877.1 serine hydrolase -
  RFN60_RS09040 (RFN60_09040) rny 1739832..1741394 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45484.80 Da        Isoelectric Point: 5.2504

>NTDB_id=875568 RFN60_RS09025 WP_069704104.1 1735744..1736994(+) (cinA) [Bacillus subtilis strain CP38]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLCFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSIACKEKGITISAAESFTGGLFSEWLTDHSGASKLFAGGVVCYTNDVKQNVLG
VKKETLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=875568 RFN60_RS09025 WP_069704104.1 1735744..1736994(+) (cinA) [Bacillus subtilis strain CP38]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGTTGCTGCTTGGTCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGCTCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCACAGAGCATGAATCGCGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACTGTTCT
TTGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCACAAACCAATCCGACAATTG
CGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTATAGCATGTAAGGAAAAAGGCATAACAATTTCTGCGGCAGAAAGCTTTACCGGAGGGCTGTTTTCTGAATGGCTGA
CGGATCATAGCGGTGCCTCAAAATTATTTGCCGGGGGCGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTCAAGAAGGAAACATTAGATCGTTTTGGGGCGGTCAGCAAGGAGTGCGCATCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGCATTTCCGCAAATGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGGATCAGAAAACGC
GGCGCTAAATACGGCTGCCATTTAATCTTAAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

99.76

100

0.998
  cinA Streptococcus mitis SK321

45.455

100

0.457
  cinA Streptococcus mitis NCTC 12261

45.455

100

0.457
  cinA Streptococcus mutans UA159

45.763

99.279

0.454
  cinA Streptococcus pneumoniae TIGR4

45.215

100

0.454
  cinA Streptococcus pneumoniae Rx1

44.976

100

0.452
  cinA Streptococcus pneumoniae R6

44.976

100

0.452
  cinA Streptococcus pneumoniae D39

44.737

100

0.45
  cinA Streptococcus suis isolate S10

41.114

90.625

0.373