Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RFB14_RS11605 Genome accession   NZ_CP133587
Coordinates   2418656..2419714 (+) Length   352 a.a.
NCBI ID   WP_003385782.1    Uniprot ID   M8DKI6
Organism   Brevibacillus borstelensis strain NEB264     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2413656..2424714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFB14_RS11585 (RFB14_11585) rimO 2413684..2415030 (+) 1347 WP_003385786.1 30S ribosomal protein S12 methylthiotransferase RimO -
  RFB14_RS11590 (RFB14_11590) pgsA 2415031..2415606 (+) 576 WP_003385785.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RFB14_RS11595 (RFB14_11595) cinA 2415660..2416910 (+) 1251 WP_311068399.1 competence/damage-inducible protein A Machinery gene
  RFB14_RS11600 (RFB14_11600) - 2416907..2418493 (+) 1587 WP_003385783.1 DEAD/DEAH box helicase -
  RFB14_RS11605 (RFB14_11605) recA 2418656..2419714 (+) 1059 WP_003385782.1 recombinase RecA Machinery gene
  RFB14_RS11610 (RFB14_11610) - 2419780..2420421 (+) 642 WP_003385781.1 regulatory protein RecX -
  RFB14_RS11615 (RFB14_11615) rny 2420728..2422254 (+) 1527 WP_003385780.1 ribonuclease Y -
  RFB14_RS11620 (RFB14_11620) ltrA 2422839..2424104 (+) 1266 WP_024985202.1 group II intron reverse transcriptase/maturase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37716.09 Da        Isoelectric Point: 4.8876

>NTDB_id=875172 RFB14_RS11605 WP_003385782.1 2418656..2419714(+) (recA) [Brevibacillus borstelensis strain NEB264]
MSDRRAALESALRQIEKQFGKGSIMKLGDMANVQVSTVSTGALAIDIALGVGGFPRGRIIEIYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPVYAAKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAESIKVGNDVIGSKT
KVKVVKNKVAPPFKTAEVDIMYGEGISKEGSILDIGAEIDVVQKSGAWYSFNDERLGQGRENAKIYLKENPAIAAQIEAK
VREYYSLNPGSIPATEPVVDPEQDEEPMFDLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=875172 RFB14_RS11605 WP_003385782.1 2418656..2419714(+) (recA) [Brevibacillus borstelensis strain NEB264]
TTGTCAGACCGCCGCGCCGCTTTAGAAAGTGCATTGCGTCAAATAGAAAAACAATTTGGTAAGGGTTCCATCATGAAGCT
GGGGGATATGGCGAACGTTCAAGTTTCCACCGTATCCACTGGCGCTCTAGCCATTGATATTGCTCTCGGTGTGGGAGGAT
TCCCGCGTGGCCGAATTATTGAAATTTATGGACCGGAATCTTCCGGTAAAACGACTGTCGCCCTTCATGCGATTGCAGAA
GTACAGCGTCAGGGAGGACAGGCAGCATTTATCGATGCGGAGCACGCACTCGATCCTGTTTACGCCGCCAAGCTGGGCGT
CAACATCGAGGAACTGCTGCTGTCCCAGCCGGATACTGGCGAGCAGGCTCTGGAAATCGCGGAAGCGCTGGTTCGTTCAG
GCGCGGTAGACATCATTGTCGTCGACTCCGTTGCGGCACTCGTACCGAAGGCTGAGATTGAAGGGGAGATGGGCGATTCG
CACGTCGGTTTGCAGGCCCGTCTGATGTCGCAAGCTCTGCGCAAGCTCTCCGGTGCCATCAACAAGTCCAAGACGATTGC
GATCTTTATTAACCAGCTGCGTGAAAAAGTAGGGGTTATGTTCGGAAACCCTGAAACAACGCCTGGTGGACGAGCTCTGA
AGTTCTATGCCAGCGTTCGCCTGGATGTCCGCAAGGCTGAATCGATCAAAGTAGGCAATGACGTGATCGGCTCCAAAACC
AAGGTGAAGGTCGTCAAGAACAAGGTAGCGCCGCCGTTTAAGACTGCGGAAGTGGACATTATGTACGGCGAAGGGATTTC
CAAGGAAGGAAGCATTCTTGATATCGGTGCCGAAATCGACGTGGTGCAAAAGAGCGGAGCATGGTATTCTTTCAATGATG
AGCGTTTGGGCCAAGGCCGTGAAAATGCCAAGATCTACTTAAAGGAAAATCCGGCAATCGCAGCCCAAATCGAGGCCAAG
GTACGTGAATACTACAGCCTGAACCCAGGTTCCATCCCGGCAACCGAACCGGTCGTCGATCCTGAGCAAGATGAGGAACC
GATGTTCGATCTGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M8DKI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.317

93.182

0.767
  recA Latilactobacillus sakei subsp. sakei 23K

69.591

97.159

0.676
  recA Streptococcus mitis NCTC 12261

66.289

100

0.665
  recA Streptococcus pyogenes NZ131

65.537

100

0.659
  recA Streptococcus pneumoniae TIGR4

69.069

94.602

0.653
  recA Streptococcus pneumoniae Rx1

69.069

94.602

0.653
  recA Streptococcus mitis SK321

69.069

94.602

0.653
  recA Streptococcus pneumoniae D39

69.069

94.602

0.653
  recA Streptococcus pneumoniae R6

69.069

94.602

0.653
  recA Lactococcus lactis subsp. cremoris KW2

68.485

93.75

0.642
  recA Streptococcus mutans UA159

67.781

93.466

0.634
  recA Neisseria gonorrhoeae MS11

63.295

98.295

0.622
  recA Neisseria gonorrhoeae MS11

63.295

98.295

0.622
  recA Neisseria gonorrhoeae strain FA1090

63.295

98.295

0.622
  recA Ralstonia pseudosolanacearum GMI1000

67.077

92.33

0.619
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.055

92.898

0.614
  recA Vibrio cholerae strain A1552

66.055

92.898

0.614
  recA Acinetobacter baumannii D1279779

61.714

99.432

0.614
  recA Glaesserella parasuis strain SC1401

62.209

97.727

0.608
  recA Pseudomonas stutzeri DSM 10701

60.933

97.443

0.594
  recA Acinetobacter baylyi ADP1

64.198

92.045

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

92.898

0.591
  recA Helicobacter pylori 26695

60.526

97.159

0.588
  recA Helicobacter pylori strain NCTC11637

60.234

97.159

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.24

91.193

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

90.909

0.568