Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RFB14_RS11595 Genome accession   NZ_CP133587
Coordinates   2415660..2416910 (+) Length   416 a.a.
NCBI ID   WP_311068399.1    Uniprot ID   -
Organism   Brevibacillus borstelensis strain NEB264     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2410660..2421910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFB14_RS11565 (RFB14_11565) - 2411470..2411739 (+) 270 WP_003385789.1 DUF3243 domain-containing protein -
  RFB14_RS11570 (RFB14_11570) - 2411864..2412643 (+) 780 WP_003385788.1 YmfK family protein -
  RFB14_RS11575 (RFB14_11575) - 2412662..2413569 (+) 908 Protein_2282 RodZ domain-containing protein -
  RFB14_RS11585 (RFB14_11585) rimO 2413684..2415030 (+) 1347 WP_003385786.1 30S ribosomal protein S12 methylthiotransferase RimO -
  RFB14_RS11590 (RFB14_11590) pgsA 2415031..2415606 (+) 576 WP_003385785.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RFB14_RS11595 (RFB14_11595) cinA 2415660..2416910 (+) 1251 WP_311068399.1 competence/damage-inducible protein A Machinery gene
  RFB14_RS11600 (RFB14_11600) - 2416907..2418493 (+) 1587 WP_003385783.1 DEAD/DEAH box helicase -
  RFB14_RS11605 (RFB14_11605) recA 2418656..2419714 (+) 1059 WP_003385782.1 recombinase RecA Machinery gene
  RFB14_RS11610 (RFB14_11610) - 2419780..2420421 (+) 642 WP_003385781.1 regulatory protein RecX -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45251.04 Da        Isoelectric Point: 5.9146

>NTDB_id=875171 RFB14_RS11595 WP_311068399.1 2415660..2416910(+) (cinA) [Brevibacillus borstelensis strain NEB264]
MKAEIIAVGTELLLGQIANTNAQFLSQKLAEIGVGVYFHTVVGDNTERLMQVIKQASVRSDLIIFTGGLGPTQDDLTKET
VAAHIDAGLVTDPVALERIESFFHQRGIVMTENNRKQALVFDRGQVFPNDTGMAPGMAAEHNGRTFVLLPGPPSELYPMA
DRYVMPYLIGLLPEQQVFHSHVLRFYGIGESALEEQLLDLIESQENPTIAPYAKEFEVTLRITARAKTVAEAEKLIEPVE
REIYRRLGEFIYAKGETSLHEVLVEELKQNGKTIACAESCTGGKVASLVTSVPGSSTVMRGGIVCYTNDAKRELVDVPQA
VLDTDGAVSEQTARLLAENVRQKLRATCGISVTGVAGPDPSEGKPVGLVYIGVAIDGLPTVVKELRLAGRRHAIVGRAAK
FALFYALQRLKKGERI

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=875171 RFB14_RS11595 WP_311068399.1 2415660..2416910(+) (cinA) [Brevibacillus borstelensis strain NEB264]
ATGAAAGCGGAGATTATTGCTGTTGGAACAGAGCTTTTACTGGGGCAGATCGCCAATACCAATGCGCAGTTTTTGTCGCA
AAAATTGGCGGAGATCGGCGTAGGAGTCTATTTCCATACGGTTGTGGGCGACAACACCGAGCGGCTGATGCAGGTCATCA
AGCAAGCTTCTGTCCGCTCCGACCTGATTATTTTTACCGGCGGTCTGGGCCCGACTCAGGACGATTTGACCAAGGAAACG
GTCGCGGCACATATTGACGCCGGACTTGTGACTGATCCTGTGGCGCTGGAACGCATTGAATCGTTTTTTCACCAGCGCGG
CATTGTCATGACAGAAAACAATCGCAAGCAGGCGCTCGTTTTTGACCGCGGGCAGGTGTTTCCGAACGACACGGGGATGG
CGCCGGGGATGGCAGCAGAGCACAATGGCCGTACATTTGTGCTTTTGCCGGGGCCGCCGAGCGAACTGTACCCGATGGCC
GATCGGTATGTCATGCCTTATTTGATCGGCTTGCTGCCGGAGCAGCAGGTGTTTCACTCCCATGTCCTGCGTTTTTACGG
GATTGGCGAATCCGCATTGGAAGAACAGCTGCTCGATCTGATTGAAAGCCAGGAGAATCCGACGATTGCCCCTTATGCCA
AAGAGTTTGAGGTTACACTGCGGATTACGGCACGGGCAAAAACGGTGGCCGAAGCAGAGAAGCTGATCGAGCCGGTCGAG
CGGGAGATTTACAGACGTTTGGGCGAATTTATCTATGCCAAAGGGGAAACCTCCCTCCACGAGGTCCTTGTAGAAGAGTT
GAAACAAAACGGGAAGACCATCGCATGCGCCGAGAGCTGCACAGGCGGCAAAGTCGCCTCGCTAGTTACCTCCGTTCCCG
GCAGTTCAACAGTCATGCGCGGGGGAATCGTATGCTATACGAACGATGCCAAGCGCGAGCTGGTCGATGTTCCCCAAGCT
GTACTCGACACTGACGGAGCGGTAAGTGAGCAAACAGCAAGGCTGCTTGCCGAAAACGTGCGTCAAAAACTGCGCGCGAC
CTGCGGCATTTCGGTAACCGGTGTTGCCGGTCCGGACCCTTCAGAGGGCAAACCCGTGGGACTTGTTTACATTGGAGTGG
CAATAGATGGACTGCCGACTGTTGTCAAAGAGCTCCGACTTGCCGGCAGAAGACACGCTATCGTGGGACGTGCTGCCAAA
TTTGCTTTATTCTACGCGCTTCAGCGACTAAAGAAAGGTGAACGTATATGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.365

98.798

0.498
  cinA Streptococcus pneumoniae TIGR4

48.086

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.847

100

0.481
  cinA Streptococcus pneumoniae R6

47.847

100

0.481
  cinA Streptococcus pneumoniae D39

47.608

100

0.478
  cinA Streptococcus mitis NCTC 12261

47.608

100

0.478
  cinA Streptococcus mitis SK321

47.368

100

0.476
  cinA Streptococcus mutans UA159

46.366

95.913

0.445
  cinA Streptococcus suis isolate S10

40.759

94.952

0.387