Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RDV54_RS06035 Genome accession   NZ_CP133471
Coordinates   1272739..1273893 (-) Length   384 a.a.
NCBI ID   WP_078228268.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1267739..1278893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS06015 (RDV54_06015) - 1269070..1269531 (-) 462 WP_000360529.1 MarR family winged helix-turn-helix transcriptional regulator -
  RDV54_RS06020 (RDV54_06020) - 1269745..1270390 (+) 646 Protein_1169 DUF4190 domain-containing protein -
  RDV54_RS06025 (RDV54_06025) - 1270440..1271156 (-) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RDV54_RS06030 (RDV54_06030) - 1271253..1272623 (-) 1371 WP_001036250.1 MATE family efflux transporter -
  RDV54_RS06035 (RDV54_06035) recA 1272739..1273893 (-) 1155 WP_078228268.1 recombinase RecA Machinery gene
  RDV54_RS06040 (RDV54_06040) cinA 1273948..1275204 (-) 1257 WP_000642690.1 competence/damage-inducible protein A Machinery gene
  RDV54_RS06045 (RDV54_06045) brpA 1275282..1276337 (-) 1056 WP_000239266.1 biofilm formation/cell division transcriptional regulator BrpA -
  RDV54_RS06050 (RDV54_06050) - 1276345..1276863 (-) 519 WP_000455549.1 GNAT family N-acetyltransferase -
  RDV54_RS06055 (RDV54_06055) tsaE 1276853..1277296 (-) 444 WP_000288249.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  RDV54_RS06060 (RDV54_06060) comM 1277392..1278024 (-) 633 WP_000970273.1 hypothetical protein Regulator
  RDV54_RS06065 (RDV54_06065) ndk 1278154..1278576 (-) 423 WP_004239114.1 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41317.02 Da        Isoelectric Point: 4.7523

>NTDB_id=874492 RDV54_RS06035 WP_078228268.1 1272739..1273893(-) (recA) [Streptococcus mitis strain LMG 14557]
MAKKPKKLDEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
STQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLADNPEIFDEIDHQVRVQFGLIDGEEIAESKKDEAAQVDSVNEEVTLDLGDELEIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=874492 RDV54_RS06035 WP_078228268.1 1272739..1273893(-) (recA) [Streptococcus mitis strain LMG 14557]
ATGGCGAAAAAACCAAAAAAATTAGATGAAATTTCAAAAAAATTCGGGGCAGAACGTGAAAAAGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAGGGTTCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTGGCTCTTGACATTGCCCTTGGTTCAGGTGGTTATCCTAAGGGACGTATCATTGAAATCTATGGGCCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCGCAAGCACAAAAAGAAGGTGGTATTGCTGCCTTTATCGA
TGCGGAACATGCCCTTGATCCAGCTTATGCTGCGGCCCTTGGTGTCAACATTGACGAATTGCTCTTGTCACAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCAGGAAAATTGATTGACTCAGGAGCCGTGGATCTTGTCGTAGTCGACTCAGTTGCG
GCCCTTGTCCCTCGTGCGGAAATTGATGGAGATATCGGTGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
TATGCGTAAACTTGGTGCTTCTATCAATAAAACCAAAACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGGG
TCATGTTTGGAAATCCAGAAACAACTCCTGGTGGACGTGCTCTGAAATTCTACGCATCAGTCCGTTTGGATGTTCGTGGA
AGCACACAAATCAAGGGAACTGGTGACCAAAAAGATACCAATGTCGGTAAAGAAACTAAAATCAAGGTCGTGAAAAACAA
GGTGGCTCCACCATTTAAGGAAGCCTTCGTTGAAATCATGTACGGAGAAGGTATTTCTAAGACTGGTGAACTCTTGAAAA
TCGCAAGCGATTTGGATATCATCAAAAAAGCAGGAGCTTGGTACTCTTACAAGGATGAGAAAATCGGGCAAGGTTCTGAA
AATGCTAAGAAATACTTGGCAGATAACCCAGAAATCTTTGATGAAATTGACCATCAAGTCCGTGTTCAATTTGGTTTGAT
TGATGGAGAAGAAATTGCTGAAAGCAAAAAAGATGAAGCAGCTCAAGTAGACTCTGTGAATGAAGAAGTAACCCTTGACC
TAGGCGATGAGCTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

100

100

1
  recA Streptococcus mitis SK321

98.958

100

0.99
  recA Streptococcus pneumoniae Rx1

94.072

100

0.951
  recA Streptococcus pneumoniae D39

94.072

100

0.951
  recA Streptococcus pneumoniae R6

94.072

100

0.951
  recA Streptococcus pneumoniae TIGR4

94.072

100

0.951
  recA Streptococcus mutans UA159

84.293

99.479

0.839
  recA Streptococcus pyogenes NZ131

84.514

99.219

0.839
  recA Lactococcus lactis subsp. cremoris KW2

78.693

91.667

0.721
  recA Latilactobacillus sakei subsp. sakei 23K

69.486

86.198

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

68.788

85.938

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.396

84.115

0.542
  recA Glaesserella parasuis strain SC1401

61.176

88.542

0.542
  recA Acinetobacter baylyi ADP1

58.192

92.188

0.536
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.195

85.417

0.531
  recA Acinetobacter baumannii D1279779

61.963

84.896

0.526
  recA Vibrio cholerae strain A1552

62.229

84.115

0.523
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.229

84.115

0.523
  recA Neisseria gonorrhoeae strain FA1090

60.542

86.458

0.523
  recA Neisseria gonorrhoeae MS11

60.542

86.458

0.523
  recA Neisseria gonorrhoeae MS11

60.542

86.458

0.523
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.967

85.677

0.505
  recA Pseudomonas stutzeri DSM 10701

58.896

84.896

0.5
  recA Helicobacter pylori strain NCTC11637

57.751

85.677

0.495
  recA Helicobacter pylori 26695

57.751

85.677

0.495
  recA Ralstonia pseudosolanacearum GMI1000

59.621

82.552

0.492