Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   RDV54_RS06060 Genome accession   NZ_CP133471
Coordinates   1277392..1278024 (-) Length   210 a.a.
NCBI ID   WP_000970273.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1272392..1283024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS06035 (RDV54_06035) recA 1272739..1273893 (-) 1155 WP_078228268.1 recombinase RecA Machinery gene
  RDV54_RS06040 (RDV54_06040) cinA 1273948..1275204 (-) 1257 WP_000642690.1 competence/damage-inducible protein A Machinery gene
  RDV54_RS06045 (RDV54_06045) brpA 1275282..1276337 (-) 1056 WP_000239266.1 biofilm formation/cell division transcriptional regulator BrpA -
  RDV54_RS06050 (RDV54_06050) - 1276345..1276863 (-) 519 WP_000455549.1 GNAT family N-acetyltransferase -
  RDV54_RS06055 (RDV54_06055) tsaE 1276853..1277296 (-) 444 WP_000288249.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  RDV54_RS06060 (RDV54_06060) comM 1277392..1278024 (-) 633 WP_000970273.1 hypothetical protein Regulator
  RDV54_RS06065 (RDV54_06065) ndk 1278154..1278576 (-) 423 WP_004239114.1 nucleoside-diphosphate kinase -
  RDV54_RS06070 (RDV54_06070) rpoC 1278882..1282559 (-) 3678 WP_000228758.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24055.23 Da        Isoelectric Point: 9.2991

>NTDB_id=874494 RDV54_RS06060 WP_000970273.1 1277392..1278024(-) (comM) [Streptococcus mitis strain LMG 14557]
MMEKMKKQIRVLLLLTVFGLSSCSCLSLSTWALMLNQNCFYYLVGMLLLASIGAGLNYYRGQGNQHYSVFKEDKQQFLYS
LLLLVNILGLALIVIEHILAGNTSVEGFVEAFLPSFFFLFGIDLLVFLPIQKYVNGVKKFLGKKEICFISGLAILIFLRN
PWMLLSMTFYIALGMLFLGLLVPKVIRWEVSFYSHLMRDILLVVFLLFLF

Nucleotide


Download         Length: 633 bp        

>NTDB_id=874494 RDV54_RS06060 WP_000970273.1 1277392..1278024(-) (comM) [Streptococcus mitis strain LMG 14557]
ATGATGGAAAAAATGAAAAAGCAAATTCGAGTTTTGTTATTGCTGACAGTTTTTGGTCTTAGCAGCTGTTCTTGTTTAAG
TTTATCTACTTGGGCCTTGATGTTAAATCAAAACTGCTTCTATTATTTAGTTGGCATGTTGCTTCTTGCCAGTATTGGTG
CAGGGCTAAACTATTATAGAGGGCAGGGAAATCAACATTATTCAGTTTTTAAGGAAGATAAGCAACAATTCTTGTATAGT
CTCTTGCTCTTAGTAAATATTTTGGGTTTAGCTTTAATTGTCATAGAACATATCCTTGCAGGAAATACATCCGTAGAAGG
ATTTGTGGAAGCCTTTCTACCGAGTTTCTTTTTCTTATTTGGGATTGATTTGTTAGTTTTTCTGCCGATTCAGAAGTATG
TAAATGGAGTGAAAAAGTTTTTGGGAAAGAAGGAAATCTGTTTTATTAGTGGACTAGCTATTCTAATCTTTCTCAGAAAT
CCTTGGATGCTATTGTCCATGACCTTTTATATTGCCTTGGGGATGCTATTTCTAGGACTGTTGGTGCCAAAAGTCATTCG
CTGGGAAGTTTCATTTTACAGTCATTTGATGAGAGATATCTTGTTAGTTGTCTTCTTACTGTTTCTATTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus mitis NCTC 12261

100

100

1
  comM Streptococcus mitis SK321

92.965

94.762

0.881
  comM Streptococcus pneumoniae D39

39.024

97.619

0.381
  comM Streptococcus pneumoniae R6

39.024

97.619

0.381
  comM Streptococcus pneumoniae TIGR4

39.024

97.619

0.381