Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RCG25_RS17685 Genome accession   NZ_CP133269
Coordinates   3515037..3516080 (-) Length   347 a.a.
NCBI ID   WP_308080140.1    Uniprot ID   -
Organism   Neobacillus sp. PS2-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3510037..3521080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG25_RS17670 (RCG25_17670) spoVS 3511801..3512061 (-) 261 WP_003211281.1 stage V sporulation protein SpoVS -
  RCG25_RS17675 (RCG25_17675) - 3512253..3513050 (-) 798 WP_308080138.1 TIGR00282 family metallophosphoesterase -
  RCG25_RS17680 (RCG25_17680) rny 3513161..3514720 (-) 1560 WP_308080139.1 ribonuclease Y -
  RCG25_RS17685 (RCG25_17685) recA 3515037..3516080 (-) 1044 WP_308080140.1 recombinase RecA Machinery gene
  RCG25_RS17690 (RCG25_17690) cinA 3517289..3518542 (-) 1254 WP_308084214.1 competence/damage-inducible protein A Machinery gene
  RCG25_RS17695 (RCG25_17695) pgsA 3518577..3519161 (-) 585 WP_308080141.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RCG25_RS17700 (RCG25_17700) - 3519212..3520114 (-) 903 WP_308080142.1 RodZ domain-containing protein -
  RCG25_RS17705 (RCG25_17705) - 3520136..3520927 (-) 792 WP_308084215.1 DUF3388 domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37840.15 Da        Isoelectric Point: 5.0136

>NTDB_id=873146 RCG25_RS17685 WP_308080140.1 3515037..3516080(-) (recA) [Neobacillus sp. PS2-9]
MSDRKAALEMALKQIEKQFGKGSIMKMGEKTDTRILTSPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPAYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDILVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGSINKSKTIAIFINQIREKIGIMFGNPETTPGGRALKFYSTVRIEVRRAEALKQGNDIVGNKT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGSELDIVQKSGSWYSYNDERLGQGRENAKLFLKENPDVRLEIQQK
IREHYGLDGEKFVTEVEEEEEFNLLDN

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=873146 RCG25_RS17685 WP_308080140.1 3515037..3516080(-) (recA) [Neobacillus sp. PS2-9]
GTGAGTGATCGTAAAGCGGCATTAGAAATGGCGTTAAAACAAATTGAAAAGCAATTTGGTAAAGGTTCCATCATGAAGAT
GGGAGAGAAAACTGATACAAGGATTCTTACGAGTCCGAGTGGGTCATTAGCACTTGATGCTGCACTTGGAGTTGGTGGAT
ATCCGAGAGGCCGTATAATTGAAGTTTATGGCCCTGAGAGCTCAGGTAAAACAACTGTTGCTTTACATGCAATTGCAGAA
GTACAAGCAAAAGGTGGACAAGCAGCATTTATTGATGCTGAGCATGCATTAGACCCCGCATATGCACAAAAATTGGGTGT
TAATATTGATGAGTTATTGTTATCGCAGCCTGATACGGGTGAACAAGCACTTGAAATCGCAGAGGCACTTGTTCGAAGCG
GTGCAATTGATATTCTTGTAGTTGACTCAGTAGCAGCATTAGTACCAAAGGCTGAAATTGAAGGTGAAATGGGAGATTCT
CACGTTGGTTTACAAGCTCGCTTGATGTCTCAAGCACTGCGAAAACTATCAGGTTCCATTAACAAATCAAAGACGATCGC
TATCTTTATTAACCAAATTCGTGAAAAAATTGGAATTATGTTTGGTAATCCCGAGACAACACCAGGTGGACGCGCATTAA
AATTCTATTCTACTGTCCGTATTGAAGTGCGTCGTGCAGAGGCGTTAAAGCAGGGAAATGATATCGTTGGTAATAAGACA
AAGATAAAGATTGTTAAGAATAAAGTTGCTCCTCCTTTCCGTACGGCAGAAGTAGACATTATGTATGGAGAAGGTATTTC
TAAAGAGGGCGAAATCATCGATTTAGGCTCCGAACTAGATATCGTTCAGAAGAGCGGTTCATGGTATTCCTATAATGATG
AAAGACTAGGTCAGGGCCGTGAAAATGCTAAGCTTTTCTTAAAAGAAAACCCTGATGTCCGTCTTGAAATTCAACAAAAA
ATCCGTGAGCACTACGGCTTAGATGGTGAAAAGTTCGTGACGGAAGTTGAAGAAGAAGAGGAATTTAATTTACTAGATAA
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

88.889

95.965

0.853
  recA Latilactobacillus sakei subsp. sakei 23K

72.384

99.135

0.718
  recA Streptococcus pneumoniae D39

66

100

0.666
  recA Streptococcus pneumoniae Rx1

66

100

0.666
  recA Streptococcus pneumoniae R6

66

100

0.666
  recA Streptococcus pneumoniae TIGR4

66

100

0.666
  recA Streptococcus mitis NCTC 12261

66.181

98.847

0.654
  recA Streptococcus mitis SK321

67.964

96.254

0.654
  recA Streptococcus mutans UA159

67.781

94.813

0.643
  recA Streptococcus pyogenes NZ131

66.768

94.524

0.631
  recA Neisseria gonorrhoeae MS11

63.743

98.559

0.628
  recA Neisseria gonorrhoeae strain FA1090

63.743

98.559

0.628
  recA Neisseria gonorrhoeae MS11

63.743

98.559

0.628
  recA Ralstonia pseudosolanacearum GMI1000

65.443

94.236

0.617
  recA Lactococcus lactis subsp. cremoris KW2

64.848

95.101

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.765

97.983

0.605
  recA Helicobacter pylori strain NCTC11637

64.615

93.66

0.605
  recA Helicobacter pylori 26695

64.308

93.66

0.602
  recA Acinetobacter baylyi ADP1

59.599

100

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

94.236

0.597
  recA Acinetobacter baumannii D1279779

60.058

98.847

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.24

92.507

0.585
  recA Vibrio cholerae strain A1552

63.24

92.507

0.585
  recA Pseudomonas stutzeri DSM 10701

63.125

92.219

0.582
  recA Glaesserella parasuis strain SC1401

62.382

91.931

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.938

92.219

0.562