Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RCG25_RS17690 Genome accession   NZ_CP133269
Coordinates   3517289..3518542 (-) Length   417 a.a.
NCBI ID   WP_308084214.1    Uniprot ID   -
Organism   Neobacillus sp. PS2-9     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3512289..3523542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG25_RS17680 (RCG25_17680) rny 3513161..3514720 (-) 1560 WP_308080139.1 ribonuclease Y -
  RCG25_RS17685 (RCG25_17685) recA 3515037..3516080 (-) 1044 WP_308080140.1 recombinase RecA Machinery gene
  RCG25_RS17690 (RCG25_17690) cinA 3517289..3518542 (-) 1254 WP_308084214.1 competence/damage-inducible protein A Machinery gene
  RCG25_RS17695 (RCG25_17695) pgsA 3518577..3519161 (-) 585 WP_308080141.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RCG25_RS17700 (RCG25_17700) - 3519212..3520114 (-) 903 WP_308080142.1 RodZ domain-containing protein -
  RCG25_RS17705 (RCG25_17705) - 3520136..3520927 (-) 792 WP_308084215.1 DUF3388 domain-containing protein -
  RCG25_RS17710 (RCG25_17710) - 3521102..3521359 (-) 258 WP_308080143.1 DUF3243 domain-containing protein -
  RCG25_RS17715 (RCG25_17715) ymfI 3521468..3522190 (-) 723 WP_308080144.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45438.09 Da        Isoelectric Point: 6.3533

>NTDB_id=873147 RCG25_RS17690 WP_308084214.1 3517289..3518542(-) (cinA) [Neobacillus sp. PS2-9]
MNAEIIAVGSELLLGQIVNTNARFISQQLAGLGINVFYHTVVGDNPDRLKSAIEIAENRSKIIIFTGGLGPTKDDLTKET
IARHLGKQLVMDEAALESIELFFKRTNRVMTENNRKQALVLEGSQVLPNDHGMAPGMVVSGENHTYMLLPGPPKEMEPMF
LHYGAKALSSKAQSNEKIVSRVLRFFGIGEAALETEIMDLIDAQSNPTIAPLAGDGEVTLRLTAKHTDENIALTMLDDVE
AKISQRVGEFLYGYDHTSLLAELTKMLKDRKLTITAAESLTGGMFQKELTSISGASTVFNGGLVCYSNEVKHQVLQVRQE
TLDKHGAVSEQCAHELAENAARIFGTDIGISFTGVAGPSEVEGKPVGTVYIGMAMKGMPTRVEKLTLGGTREAIRNRAVK
YGSYFILRNLKESQNTK

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=873147 RCG25_RS17690 WP_308084214.1 3517289..3518542(-) (cinA) [Neobacillus sp. PS2-9]
TTGAATGCTGAAATTATAGCAGTTGGTTCAGAGTTGTTACTCGGTCAGATAGTGAATACGAATGCCCGCTTTATATCGCA
ACAGTTGGCGGGGCTGGGTATTAATGTTTTTTATCATACAGTAGTTGGTGATAACCCTGACAGATTGAAGTCGGCGATTG
AAATTGCTGAAAATCGTTCTAAAATCATTATCTTTACTGGTGGTTTAGGACCAACAAAGGATGATTTAACGAAGGAAACC
ATTGCTCGTCATCTTGGTAAACAATTAGTTATGGATGAAGCGGCGTTGGAATCGATTGAGCTTTTCTTTAAGCGGACAAA
CCGTGTGATGACAGAAAATAACCGTAAGCAAGCACTTGTACTGGAAGGGTCCCAAGTCCTGCCGAATGATCATGGGATGG
CTCCAGGAATGGTTGTAAGTGGTGAAAATCATACATATATGCTTCTGCCGGGTCCTCCTAAGGAAATGGAACCGATGTTT
CTTCATTATGGGGCAAAGGCACTTTCATCGAAAGCTCAGTCGAATGAGAAAATTGTTTCAAGAGTGCTGCGGTTTTTCGG
TATTGGGGAAGCCGCATTGGAAACAGAGATTATGGATTTGATTGATGCCCAAAGCAATCCAACGATTGCACCACTTGCAG
GGGATGGAGAGGTTACGTTACGGCTTACTGCAAAGCATACGGATGAGAATATTGCTCTTACTATGCTTGATGATGTAGAA
GCTAAAATCTCACAGCGTGTCGGAGAGTTTCTGTATGGCTATGATCATACTTCATTATTGGCTGAACTGACAAAAATGTT
GAAAGATAGAAAACTTACGATTACAGCTGCAGAGAGCTTAACGGGAGGAATGTTCCAGAAGGAGCTAACGTCTATCTCCG
GTGCGAGTACAGTGTTTAATGGCGGATTGGTTTGTTATTCAAATGAGGTAAAACATCAGGTCTTACAAGTGAGACAGGAA
ACGTTAGATAAGCATGGAGCTGTAAGTGAGCAATGTGCGCATGAATTAGCCGAAAATGCAGCAAGGATTTTTGGTACGGA
TATCGGGATTAGTTTTACGGGTGTTGCCGGCCCCTCTGAGGTGGAAGGAAAGCCCGTAGGTACCGTTTATATTGGAATGG
CAATGAAAGGGATGCCGACGAGGGTTGAAAAGCTTACGCTTGGCGGAACGAGGGAAGCGATTCGAAACCGTGCGGTGAAA
TACGGCAGCTACTTTATATTACGTAATTTAAAAGAGTCACAGAATACTAAATAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-164)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.22

98.321

0.602
  cinA Streptococcus pneumoniae TIGR4

47.143

100

0.475
  cinA Streptococcus pneumoniae Rx1

46.905

100

0.472
  cinA Streptococcus mitis SK321

46.905

100

0.472
  cinA Streptococcus pneumoniae R6

46.905

100

0.472
  cinA Streptococcus pneumoniae D39

46.667

100

0.47
  cinA Streptococcus mitis NCTC 12261

46.667

100

0.47
  cinA Streptococcus mutans UA159

44.153

100

0.444
  cinA Streptococcus suis isolate S10

39.759

99.52

0.396