Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RCG20_RS18585 Genome accession   NZ_CP133266
Coordinates   3802453..3803493 (+) Length   346 a.a.
NCBI ID   WP_308181618.1    Uniprot ID   -
Organism   Neobacillus sp. PS3-40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3797453..3808493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG20_RS18560 (RCG20_18560) - 3797711..3797968 (+) 258 WP_308181613.1 DUF3243 domain-containing protein -
  RCG20_RS18565 (RCG20_18565) - 3798189..3798974 (+) 786 WP_308181614.1 YmfK family protein -
  RCG20_RS18570 (RCG20_18570) - 3798997..3799890 (+) 894 WP_308181615.1 RodZ domain-containing protein -
  RCG20_RS18575 (RCG20_18575) pgsA 3800177..3800755 (+) 579 WP_308181616.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RCG20_RS18580 (RCG20_18580) cinA 3800839..3802092 (+) 1254 WP_308181617.1 competence/damage-inducible protein A Machinery gene
  RCG20_RS18585 (RCG20_18585) recA 3802453..3803493 (+) 1041 WP_308181618.1 recombinase RecA Machinery gene
  RCG20_RS18590 (RCG20_18590) rny 3803814..3805373 (+) 1560 WP_308181619.1 ribonuclease Y -
  RCG20_RS18595 (RCG20_18595) - 3805543..3806340 (+) 798 WP_308181620.1 TIGR00282 family metallophosphoesterase -
  RCG20_RS18600 (RCG20_18600) spoVS 3806509..3806769 (+) 261 WP_308181621.1 stage V sporulation protein SpoVS -
  RCG20_RS18605 (RCG20_18605) - 3806955..3807884 (+) 930 WP_308184396.1 dipeptidase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37577.86 Da        Isoelectric Point: 5.0833

>NTDB_id=873041 RCG20_RS18585 WP_308181618.1 3802453..3803493(+) (recA) [Neobacillus sp. PS3-40]
MSDRQAALEMALKQIEKQFGKGSIMKMGEKTDTQVLTSPSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQLKGGQAAFIDAEHALDPAYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEALKQGNDIVGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGMSREGEIIDLGSELDIIQKSGSWYSYNEERLGQGRENAKQFLKENREISQQIQLK
IREHYGLDGNKAITESGDSEELELLD

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=873041 RCG20_RS18585 WP_308181618.1 3802453..3803493(+) (recA) [Neobacillus sp. PS3-40]
GTGAGTGATCGTCAAGCTGCCCTTGAAATGGCATTAAAACAAATAGAAAAGCAATTTGGTAAAGGTTCGATTATGAAGAT
GGGTGAAAAAACAGATACGCAGGTTTTGACTTCCCCGAGTGGTTCTTTGGCACTCGATGTTGCTCTTGGGGTAGGCGGTT
ATCCAAGAGGGCGTATCATCGAAATTTATGGCCCTGAGAGTTCAGGTAAAACAACTGTTGCATTACATGCTATTGCTGAG
GTCCAATTAAAAGGTGGACAGGCAGCGTTTATCGATGCCGAGCATGCACTTGATCCAGCATATGCACAAAAGCTTGGTGT
TAATATTGATGAGCTTTTACTGTCACAACCTGATACAGGTGAACAGGCCCTTGAAATTGCGGAGGCACTTGTTCGCAGTG
GAGCGGTAGATATCCTTGTCATTGACTCCGTTGCAGCATTAGTACCAAAAGCAGAAATTGAAGGAGACATGGGAGATTCA
CATGTAGGTTTACAGGCCCGCTTGATGTCCCAAGCCTTAAGAAAACTATCTGGCGCTATCAATAAATCAAAAACAATTGC
TATCTTTATTAACCAAATTCGTGAAAAAGTAGGGGTAATGTTCGGAAACCCTGAGATAACTCCTGGTGGCCGTGCTCTTA
AATTCTATTCAACTGTTCGTCTTGAAGTGCGCCGTGCGGAAGCGTTAAAGCAAGGTAATGATATTGTTGGTAATAAAACA
AAAATCAAAGTGGTAAAAAATAAAGTAGCTCCTCCTTTCCGTACTGCTGAAGTGGATATTATGTATGGAGAAGGTATGTC
CAGAGAAGGAGAAATCATTGACCTTGGCTCTGAATTAGATATCATTCAAAAAAGCGGCTCTTGGTATTCTTACAATGAGG
AGCGACTAGGCCAAGGCCGTGAAAATGCAAAACAATTCTTGAAGGAAAATCGTGAAATTTCCCAACAGATTCAGCTGAAA
ATCCGCGAACATTATGGATTAGATGGAAACAAAGCGATAACAGAATCAGGTGATTCAGAGGAATTAGAATTACTTGACTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.189

96.243

0.858
  recA Latilactobacillus sakei subsp. sakei 23K

76.923

93.931

0.723
  recA Streptococcus mitis NCTC 12261

67.055

99.133

0.665
  recA Streptococcus mitis SK321

67.857

97.11

0.659
  recA Streptococcus pneumoniae Rx1

67.16

97.688

0.656
  recA Streptococcus pneumoniae D39

67.16

97.688

0.656
  recA Streptococcus pneumoniae R6

67.16

97.688

0.656
  recA Streptococcus pneumoniae TIGR4

67.16

97.688

0.656
  recA Streptococcus mutans UA159

68.997

95.087

0.656
  recA Streptococcus pyogenes NZ131

67.988

94.798

0.645
  recA Ralstonia pseudosolanacearum GMI1000

66.361

94.509

0.627
  recA Lactococcus lactis subsp. cremoris KW2

65.455

95.376

0.624
  recA Neisseria gonorrhoeae MS11

65.138

94.509

0.616
  recA Neisseria gonorrhoeae MS11

65.138

94.509

0.616
  recA Neisseria gonorrhoeae strain FA1090

65.138

94.509

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.765

98.266

0.607
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.486

92.775

0.598
  recA Vibrio cholerae strain A1552

64.486

92.775

0.598
  recA Glaesserella parasuis strain SC1401

59.593

99.422

0.592
  recA Helicobacter pylori strain NCTC11637

62.769

93.931

0.59
  recA Acinetobacter baumannii D1279779

59.475

99.133

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

94.509

0.587
  recA Helicobacter pylori 26695

62.462

93.931

0.587
  recA Pseudomonas stutzeri DSM 10701

62.5

92.486

0.578
  recA Acinetobacter baylyi ADP1

61.491

93.064

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

92.486

0.566