Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RCG20_RS18580 Genome accession   NZ_CP133266
Coordinates   3800839..3802092 (+) Length   417 a.a.
NCBI ID   WP_308181617.1    Uniprot ID   -
Organism   Neobacillus sp. PS3-40     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3795839..3807092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG20_RS18555 (RCG20_18555) ymfI 3796901..3797623 (+) 723 WP_308181612.1 elongation factor P 5-aminopentanone reductase -
  RCG20_RS18560 (RCG20_18560) - 3797711..3797968 (+) 258 WP_308181613.1 DUF3243 domain-containing protein -
  RCG20_RS18565 (RCG20_18565) - 3798189..3798974 (+) 786 WP_308181614.1 YmfK family protein -
  RCG20_RS18570 (RCG20_18570) - 3798997..3799890 (+) 894 WP_308181615.1 RodZ domain-containing protein -
  RCG20_RS18575 (RCG20_18575) pgsA 3800177..3800755 (+) 579 WP_308181616.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RCG20_RS18580 (RCG20_18580) cinA 3800839..3802092 (+) 1254 WP_308181617.1 competence/damage-inducible protein A Machinery gene
  RCG20_RS18585 (RCG20_18585) recA 3802453..3803493 (+) 1041 WP_308181618.1 recombinase RecA Machinery gene
  RCG20_RS18590 (RCG20_18590) rny 3803814..3805373 (+) 1560 WP_308181619.1 ribonuclease Y -
  RCG20_RS18595 (RCG20_18595) - 3805543..3806340 (+) 798 WP_308181620.1 TIGR00282 family metallophosphoesterase -
  RCG20_RS18600 (RCG20_18600) spoVS 3806509..3806769 (+) 261 WP_308181621.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45509.17 Da        Isoelectric Point: 5.8704

>NTDB_id=873040 RCG20_RS18580 WP_308181617.1 3800839..3802092(+) (cinA) [Neobacillus sp. PS3-40]
MNAEIIAVGSELLLGQIVNSNARFLSLHLAGLGIHVYYHTVVGDNAGRLKSAIEIAEKRSNIIIFTGGLGPTKDDLTKET
IARHVGKELIMDEKAFESIEQYFKKTNREMTENNQKQALVLRDSIVLPNDHGMAPGMMLRSNNHIYMLLPGPPKEMEPMF
LQYGRQALSSQNDAKEKIVSRVLRFFGIGEASLETGIEDLIDAQTNPTIAPLASDGEVTLRLTASHSNLDEAQALLDQTE
KAIQSRVSQYFYGYDNSSLMQELIKLLMKKNLTIAVAESLTGGMFQQELTSFPGTSALLKGGVVCYTNEVKQTLLNVKKE
TIDVQGAVSGECAKELAENVAVLVGADIGISFTGVAGPGELEGKPAGTVYIGIHLNDRKSITEELHLGGTREAIRTRAVK
YGCYLLIKLLQESQNAK

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=873040 RCG20_RS18580 WP_308181617.1 3800839..3802092(+) (cinA) [Neobacillus sp. PS3-40]
ATGAATGCCGAAATTATTGCAGTAGGGTCAGAATTGTTATTAGGTCAAATTGTTAATTCAAATGCTCGGTTTTTATCCCT
TCACTTGGCTGGATTAGGAATTCACGTATATTATCATACAGTAGTTGGTGATAATGCGGGGCGCCTAAAATCAGCGATTG
AAATTGCCGAGAAACGTTCGAATATTATTATATTTACAGGTGGACTTGGCCCAACAAAGGATGATCTTACAAAAGAAACC
ATTGCAAGGCATGTTGGGAAAGAATTAATTATGGATGAAAAAGCATTTGAATCCATAGAGCAATATTTTAAGAAAACAAA
TCGAGAAATGACAGAAAATAATCAAAAGCAAGCACTTGTTTTAAGAGACTCAATCGTTCTTCCAAATGATCATGGCATGG
CCCCAGGAATGATGCTTCGTTCAAATAATCATATTTATATGTTACTTCCTGGACCGCCAAAAGAGATGGAGCCGATGTTT
CTTCAGTATGGTAGGCAAGCGCTATCGTCACAAAATGACGCGAAAGAAAAAATTGTTTCAAGAGTGTTACGGTTTTTTGG
GATTGGGGAAGCATCATTAGAGACGGGAATTGAAGATTTAATCGATGCTCAAACGAACCCAACGATAGCTCCGCTTGCTT
CTGATGGAGAAGTTACATTAAGATTGACTGCCAGCCACTCAAATTTGGATGAAGCACAGGCATTGCTCGATCAGACAGAA
AAAGCAATCCAATCTCGTGTGAGTCAATATTTCTACGGTTATGATAATAGTTCACTGATGCAGGAATTAATTAAACTTTT
GATGAAAAAGAACTTAACCATTGCTGTGGCAGAAAGCCTCACAGGAGGGATGTTCCAACAGGAGTTAACCTCATTTCCTG
GTACAAGTGCCTTATTAAAAGGCGGAGTCGTTTGTTACACAAATGAAGTGAAACAAACGCTTTTAAACGTGAAAAAGGAA
ACGATCGATGTTCAAGGTGCTGTAAGTGGAGAATGTGCCAAAGAATTAGCAGAGAATGTGGCTGTGCTCGTTGGCGCTGA
TATCGGTATTAGTTTCACCGGCGTCGCTGGCCCTGGTGAATTAGAGGGCAAGCCTGCTGGTACTGTGTACATCGGAATTC
ATTTGAACGACAGAAAAAGTATTACCGAAGAGTTACATCTTGGTGGGACACGTGAAGCAATCCGCACCCGTGCTGTCAAA
TATGGTTGTTATTTATTAATCAAACTTTTGCAAGAATCACAGAATGCTAAATAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-167)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.024

98.321

0.58
  cinA Streptococcus mutans UA159

44.869

100

0.451
  cinA Streptococcus mitis SK321

44.762

100

0.451
  cinA Streptococcus pneumoniae TIGR4

44.313

100

0.448
  cinA Streptococcus mitis NCTC 12261

44.524

100

0.448
  cinA Streptococcus pneumoniae Rx1

43.839

100

0.444
  cinA Streptococcus pneumoniae R6

43.839

100

0.444
  cinA Streptococcus pneumoniae D39

43.602

100

0.441
  cinA Streptococcus suis isolate S10

39.695

94.245

0.374